downloading reverse dependencies ‘AgroReg’, ‘EasyDescribe’, ‘factorH’, ‘FCO’, ‘LipidomicsR’, ‘popstudy’, ‘voiceR’, ‘cld’ trying URL 'file:///data/Repositories/CRAN/src/contrib/AgroReg_1.2.11.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/EasyDescribe_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/factorH_0.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/FCO_2.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/LipidomicsR_0.3.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/popstudy_1.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/voiceR_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cld_0.0.1.tar.gz' installing dependencies ‘ARTool’, ‘CATT’, ‘corrr’, ‘cutpointr’, ‘demography’, ‘forecast’, ‘multiCA’, ‘phia’, ‘PMCMR’, ‘PoisBinOrdNor’, ‘rcompanion’, ‘simstandard’, ‘soundgen’, ‘testthat’ also installing the dependencies ‘ROOPSD’, ‘ftsa’, ‘HMDHFDplus’, ‘phonTools’ begin installing package ‘ROOPSD’ begin installing package ‘HMDHFDplus’ begin installing package ‘phonTools’ begin installing package ‘rcompanion’ begin installing package ‘multiCA’ begin installing package ‘CATT’ begin installing package ‘forecast’ begin installing package ‘cutpointr’ begin installing package ‘PoisBinOrdNor’ begin installing package ‘simstandard’ begin installing package ‘corrr’ begin installing package ‘PMCMR’ begin installing package ‘testthat’ * installing *source* package ‘CATT’ ... ** this is package ‘CATT’ version ‘2.0’ ** package ‘CATT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CATT) * installing *source* package ‘PMCMR’ ... ** this is package ‘PMCMR’ version ‘4.4’ ** package ‘PMCMR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PMCMR) * installing *source* package ‘simstandard’ ... ** this is package ‘simstandard’ version ‘0.6.3’ ** package ‘simstandard’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simstandard) * installing *source* package ‘phonTools’ ... ** this is package ‘phonTools’ version ‘0.2-2.2’ ** package ‘phonTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phonTools) begin installing package ‘soundgen’ * installing *source* package ‘HMDHFDplus’ ... ** this is package ‘HMDHFDplus’ version ‘2.0.8’ ** package ‘HMDHFDplus’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HMDHFDplus) * installing *source* package ‘multiCA’ ... ** this is package ‘multiCA’ version ‘1.2.0’ ** package ‘multiCA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multiCA) * installing *source* package ‘corrr’ ... ** this is package ‘corrr’ version ‘0.4.5’ ** package ‘corrr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (corrr) * installing *source* package ‘PoisBinOrdNor’ ... ** this is package ‘PoisBinOrdNor’ version ‘1.6.3’ ** package ‘PoisBinOrdNor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PoisBinOrdNor) * installing *source* package ‘ROOPSD’ ... ** this is package ‘ROOPSD’ version ‘0.3.9’ ** package ‘ROOPSD’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROOPSD) * installing *source* package ‘rcompanion’ ... ** this is package ‘rcompanion’ version ‘2.5.2’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcompanion) * installing *source* package ‘soundgen’ ... ** this is package ‘soundgen’ version ‘2.8.0’ ** package ‘soundgen’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (soundgen) * installing *source* package ‘cutpointr’ ... ** this is package ‘cutpointr’ version ‘1.2.1’ ** package ‘cutpointr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpz8kMLB/R.INSTALL403217df5c10e/cutpointr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c any_inf.cpp -o any_inf.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c get_rev_dups.cpp -o get_rev_dups.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c is_equal_cpp.cpp -o is_equal_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c one_unique.cpp -o one_unique.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c which.cpp -o which.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cutpointr.so RcppExports.o any_inf.o get_rev_dups.o is_equal_cpp.o one_unique.o which.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz8kMLB/R.INSTALL403217df5c10e/cutpointr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cutpointr/00new/cutpointr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cutpointr) * installing *source* package ‘testthat’ ... ** this is package ‘testthat’ version ‘3.3.2’ ** package ‘testthat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgqH56T/R.INSTALL4032b66e8984a/testthat/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-catch.cpp -o test-catch.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-example.cpp -o test-example.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-runner.cpp -o test-runner.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o testthat.so init.o test-catch.o test-example.o test-runner.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgqH56T/R.INSTALL4032b66e8984a/testthat/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-testthat/00new/testthat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testthat) * installing *source* package ‘forecast’ ... ** this is package ‘forecast’ version ‘9.0.0’ ** package ‘forecast’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUslxe7/R.INSTALL40329300d7517/forecast/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c calcBATS.cpp -o calcBATS.o calcBATS.cpp: In function ‘SEXPREC* calcBATSFaster(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: calcBATS.cpp:91:82: warning: ‘sPeriods’ may be used uninitialized [-Wmaybe-uninitialized] 91 | yHat(0,0) = yHat(0,0) + xNought( (previousS + sPeriods[i] + adjBeta), 0); | ~~~~~~~~~~^ calcBATS.cpp:55:60: note: ‘sPeriods’ was declared here 55 | int adjBeta, previousS, lengthArma, *tau, *p, *q, *sPeriods; | ^~~~~~~~ calcBATS.cpp:89:38: warning: ‘lengthSeasonal’ may be used uninitialized [-Wmaybe-uninitialized] 89 | for(R_len_t i = 0; i < lengthSeasonal; i++) { | ~~^~~~~~~~~~~~~~~~ calcBATS.cpp:56:17: note: ‘lengthSeasonal’ was declared here 56 | R_len_t lengthSeasonal; | ^~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c calcTBATS.cpp -o calcTBATS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c etsTargetFunction.cpp -o etsTargetFunction.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from etsTargetFunction.h:3, from etsTargetFunction.cpp:7: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ etsTargetFunction.cpp: In member function ‘void EtsTargetFunction::eval(const double*, int)’: etsTargetFunction.cpp:77:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 77 | if(p_par_length != this->par.size()) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ etsTargetFunction.cpp:109:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 109 | for(int i=par.size()-nstate; i < par.size(); i++) { | ~~^~~~~~~~~~~~ etsTargetFunction.cpp:137:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 137 | for(int i=start; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 153 | for(int i=0; i <= p*this->y.size(); i++) state.push_back(0); | ~~^~~~~~~~~~~~~~~~~~~ etsTargetFunction.cpp: In member function ‘bool EtsTargetFunction::admissible()’: etsTargetFunction.cpp:288:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 288 | for(int i=0;i= 4.4.0) Imports: stats (>= 4.4.0), graphics (>= 4.4.0), boot (>= 1.3-30), DescTools (>= 0.99.58), multcompView (>= 0.1-10), plyr (>= 1.8.9), coin (>= 1.4-3), lmtest (>= 0.9-40), nortest (>= 1.0-4) Timings: user system elapsed rcompanion 98.888 6.732 108.332 Results: Check status summary: OK Source packages 1 Reverse depends 8 Check results summary: rcompanion ... OK rdepends_AgroReg ... OK rdepends_cld ... OK rdepends_EasyDescribe ... OK rdepends_factorH ... OK rdepends_FCO ... OK rdepends_LipidomicsR ... OK rdepends_popstudy ... OK rdepends_voiceR ... OK