downloading reverse dependencies ... downloading FastRet_1.1.4.tar.gz ... ok downloading fioRa_0.3.4.tar.gz ... ok downloading LipinskiFilters_1.0.1.tar.gz ... ok downloading pubchem.bio_1.0.1.tar.gz ... ok downloading rQSAR_1.0.0.tar.gz ... ok downloading RxnSim_1.0.4.tar.gz ... ok downloading webchem_1.3.1.tar.gz ... ok installing dependencies ‘CHNOSZ’, ‘fingerprint’, ‘InterpretMSSpectrum’, ‘languageserver’, ‘plot.matrix’, ‘rcdk’, ‘rcdklibs’, ‘robotstxt’, ‘toscutil’ also installing the dependencies ‘enviPat’, ‘spiderbar’ begin installing package ‘enviPat’ begin installing package ‘spiderbar’ begin installing package ‘rcdklibs’ begin installing package ‘fingerprint’ begin installing package ‘languageserver’ begin installing package ‘toscutil’ begin installing package ‘CHNOSZ’ begin installing package ‘plot.matrix’ * installing *source* package ‘plot.matrix’ ... ** this is package ‘plot.matrix’ version ‘1.6.2’ ** package ‘plot.matrix’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plot.matrix) * installing *source* package ‘toscutil’ ... ** this is package ‘toscutil’ version ‘2.8.0’ ** package ‘toscutil’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (toscutil) * installing *source* package ‘rcdklibs’ ... ** this is package ‘rcdklibs’ version ‘2.9’ ** package ‘rcdklibs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcdklibs) * installing *source* package ‘fingerprint’ ... ** this is package ‘fingerprint’ version ‘3.5.7’ ** package ‘fingerprint’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptW6HIW/R.INSTALLa092ca354ed5/fingerprint/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fpdistance.c -o fpdistance.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c readfps.c -o readfps.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fingerprint.so fpdistance.o readfps.o registerDynamicSymbol.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptW6HIW/R.INSTALLa092ca354ed5/fingerprint/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fingerprint/00new/fingerprint/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘xor’ from package ‘base’ in package ‘fingerprint’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fingerprint) begin installing package ‘rcdk’ * installing *source* package ‘enviPat’ ... ** this is package ‘enviPat’ version ‘2.6’ ** package ‘enviPat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgVYqny/R.INSTALLa092f74b51d2a/enviPat/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c combination.c -o combination.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c element.c -o element.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enviPat_init.c -o enviPat_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c isotope.c -o isotope.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c main.c -o main.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parse.c -o parse.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c peak.c -o peak.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c profile.c -o profile.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o enviPat.so combination.o element.o enviPat_init.o isotope.o main.o parse.o peak.o profile.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgVYqny/R.INSTALLa092f74b51d2a/enviPat/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-enviPat/00new/enviPat/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (enviPat) begin installing package ‘InterpretMSSpectrum’ * installing *source* package ‘rcdk’ ... ** this is package ‘rcdk’ version ‘3.8.2’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcdk) * installing *source* package ‘InterpretMSSpectrum’ ... ** this is package ‘InterpretMSSpectrum’ version ‘1.4.5’ ** package ‘InterpretMSSpectrum’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (InterpretMSSpectrum) * installing *source* package ‘languageserver’ ... ** this is package ‘languageserver’ version ‘0.3.16’ ** package ‘languageserver’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaLdCMj/R.INSTALLa09303eeec597/languageserver/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fsm.c -o fsm.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c languageserver.c -o languageserver.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reader.c -o reader.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c search.c -o search.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stack.c -o stack.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o languageserver.so fsm.o languageserver.o reader.o search.o stack.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaLdCMj/R.INSTALLa09303eeec597/languageserver/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-languageserver/00new/languageserver/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (languageserver) * installing *source* package ‘CHNOSZ’ ... ** this is package ‘CHNOSZ’ version ‘2.2.0’ ** package ‘CHNOSZ’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpF4xFPL/R.INSTALLa093b4140bf35/CHNOSZ/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c H2O92D.f -o H2O92D.o H2O92D.f:2839:37: 2839 | DOUBLE PRECISION FUNCTION power(base,exp) | ^ Warning: ‘__result_power’ may be used uninitialized [-Wmaybe-uninitialized] H2O92D.f:2943:72: 2943 | END | ^ Warning: ‘__result_tdegus’ may be used uninitialized [-Wmaybe-uninitialized] H2O92D.f:2920:38: 2920 | DOUBLE PRECISION FUNCTION TdegUS(it,t) | ^ note: ‘__result_tdegus’ was declared here H2O92D.f:2913:72: 2913 | END | ^ Warning: ‘__result_tdegk’ may be used uninitialized [-Wmaybe-uninitialized] H2O92D.f:2890:37: 2890 | DOUBLE PRECISION FUNCTION TdegK(it,t) | ^ note: ‘__result_tdegk’ was declared here gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c count_letters.c -o count_letters.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o CHNOSZ.so H2O92D.o count_letters.o init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpF4xFPL/R.INSTALLa093b4140bf35/CHNOSZ/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-CHNOSZ/00new/CHNOSZ/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CHNOSZ) * installing *source* package ‘spiderbar’ ... ** this is package ‘spiderbar’ version ‘0.2.5’ ** package ‘spiderbar’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp58Ofa6/R.INSTALLa09333de052c/spiderbar/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c agent.cpp -o agent.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c directive.cpp -o directive.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c psl.cpp -o psl.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c punycode.cpp -o punycode.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c repmain.cpp -o repmain.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c robots.cpp -o robots.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c url.cpp -o url.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utf8.cpp -o utf8.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o spiderbar.so RcppExports.o agent.o directive.o psl.o punycode.o repmain.o robots.o url.o utf8.o -L. -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp58Ofa6/R.INSTALLa09333de052c/spiderbar/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-spiderbar/00new/spiderbar/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spiderbar) begin installing package ‘robotstxt’ * installing *source* package ‘robotstxt’ ... ** this is package ‘robotstxt’ version ‘0.7.15’ ** package ‘robotstxt’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robotstxt) checking rcdk_3.8.2.tar.gz ... checking FastRet_1.1.4.tar.gz ... checking fioRa_0.3.4.tar.gz ... checking LipinskiFilters_1.0.1.tar.gz ... checking pubchem.bio_1.0.1.tar.gz ... checking rQSAR_1.0.0.tar.gz ... checking RxnSim_1.0.4.tar.gz ... checking webchem_1.3.1.tar.gz ... Depends: Package: rcdk Depends: rcdklibs (>= 2.9) Imports: fingerprint, rJava, methods, png, iterators, itertools Timings: user system elapsed rcdk 70.578 7.561 69.4 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 7 Check results summary: rcdk ... NOTE * checking CRAN incoming feasibility ... [6s/10s] NOTE rdepends_FastRet ... OK rdepends_fioRa ... OK rdepends_LipinskiFilters ... OK rdepends_pubchem.bio ... OK rdepends_rQSAR ... OK rdepends_RxnSim ... OK rdepends_webchem ... OK