* using log directory ‘/home/hornik/tmp/CRAN_special_gcc-san/rbiom.Rcheck’
* using R Under development (unstable) (2025-01-09 r87552)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-8) 14.2.0
    GNU Fortran (Debian 14.2.0-8) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘rbiom/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rbiom’ version ‘2.0.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rbiom’ can be installed ... [99s/99s] OK
* used C++ compiler: ‘g++-14 (Debian 14.2.0-12) 14.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
* checking loading without being on the library search path ... [5s/5s] OK
* checking whether startup messages can be suppressed ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [85s/85s] OK
* checking Rd files ... [3s/3s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [23s/23s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [149s/148s] OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
adiv_corrplot  10.827 11.711  22.621
bdiv_stats     17.781  0.181  17.487
adiv_boxplot    8.893  0.228   9.129
taxa_stats      6.689  0.078   6.771
taxa_boxplot    6.225  0.097   6.332
stats_corrplot  6.005  0.169   6.179
bdiv_heatmap    5.919  0.176   5.923
taxa_heatmap    5.687  0.074   5.780
bdiv_corrplot   5.119  0.184   5.324
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [36s/36s] OK
  Running ‘testthat.r’ [36s/35s]
* checking PDF version of manual ... [10s/10s] OK
* checking HTML version of manual ... [14s/14s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: OK