* using log directory 'd:/RCompile/CRANincoming/R-devel/rbiom.Rcheck'
* using R Under development (unstable) (2025-01-09 r87552 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'rbiom/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rbiom' version '2.0.5'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [10s] NOTE
Maintainer: 'Daniel P. Smith <dansmith01@gmail.com>'

New maintainer:
  Daniel P. Smith <dansmith01@gmail.com>
Old maintainer(s):
  Daniel P. Smith <dansmith@orst.edu>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rbiom' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 13.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [26s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [53s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [16s] ERROR
  Running 'testthat.r' [16s]
Running the tests in 'tests/testthat.r' failed.
Complete output:
  > library(testthat)
  > library(rbiom)
  > 
  > test_check("rbiom")
  [ FAIL 1 | WARN 0 | SKIP 32 | PASS 181 ]
  
  ══ Skipped tests (32) ══════════════════════════════════════════════════════════
  • On CRAN (32): 'test-as_rbiom.r:16:3', 'test-bdiv_heatmap.r:5:3',
    'test-bdiv_ord_plot.r:6:3', 'test-biom_merge.r:11:3', 'test-biom_ply.r:9:3',
    'test-biom_ply.r:48:3', 'test-boxplot.r:10:3', 'test-boxplot_build.r:3:3',
    'test-cache.r:3:3', 'test-corrplot.r:11:3', 'test-distmat_ord_table.r:6:3',
    'test-import_table.r:13:3', 'test-plot_heatmap.r:15:3',
    'test-plot_palettes.r:6:3', 'test-provenance.r:3:3', 'test-rarefy.r:3:3',
    'test-rbiom-deprecated.r:3:3', 'test-rbiom_objects.r:24:3',
    'test-read_biom.r:3:3', 'test-read_fasta.r:3:3', 'test-read_tree.r:7:3',
    'test-s3_methods.r:3:3', 'test-stats_emmeans.r:8:3',
    'test-stats_wilcox.r:3:3', 'test-taxa_heatmap.r:5:3', 'test-taxa_map.r:3:3',
    'test-taxa_stacked.r:5:3', 'test-taxa_table.r:3:3', 'test-utils.r:3:3',
    'test-validate.r:3:3', 'test-write_biom.r:19:3', 'test-write_xlsx.r:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-bdiv_table.r:7:3'): bdiv_table ───────────────────────────────
  bdiv_table(hmp5, "unifrac", weighted = TRUE)$.distance (`actual`) not equal to c(0.37, 0.42, 0.14, 0.2, 0.21, 0.32, 0.25, 0.41, 0.3, 0.4) (`expected`).
  
    `actual`: 0.354 0.439 0.144 0.195 0.209 0.334 0.251 0.391 0.314 0.418
  `expected`: 0.370 0.420 0.140 0.200 0.210 0.320 0.250 0.410 0.300 0.400
  
  [ FAIL 1 | WARN 0 | SKIP 32 | PASS 181 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... [14s] OK
* DONE
Status: 1 ERROR, 1 NOTE