* installing *source* package ‘rbiom’ ...
** this is package ‘rbiom’ version ‘2.0.13’
** using staged installation
** libs
using C compiler: ‘Debian clang version 19.1.6 (1+b1)’
clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c alpha_div.c -o alpha_div.o
clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c beta_div.c -o beta_div.o
clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c get.c -o get.o
clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c pthreads.c -o pthreads.o
clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c rarefy.c -o rarefy.o
clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c read_tree.c -o read_tree.o
clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c unifrac.c -o unifrac.o
clang-19 -shared -L/home/hornik/tmp/R-d-clang-19/lib -Wl,-O1 -o rbiom.so alpha_div.o beta_div.o get.o init.o pthreads.o rarefy.o read_tree.o unifrac.o -L/home/hornik/tmp/R-d-clang-19/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/rbiom.Rcheck/00LOCK-rbiom/00new/rbiom/libs
** R
** data
*** moving datasets to lazyload DB
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rbiom)