* using log directory ‘/home/hornik/tmp/CRAN_special_clang-san/rbiom.Rcheck’
* using R Under development (unstable) (2025-01-21 r87610)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.6 (1+b1)
    Debian flang-new version 19.1.6 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘rbiom/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rbiom’ version ‘2.0.12’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rbiom’ can be installed ... [40s/41s] OK
* used C compiler: ‘Debian clang version 19.1.6 (1+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
* checking loading without being on the library search path ... [4s/4s] OK
* checking whether startup messages can be suppressed ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [81s/81s] OK
* checking Rd files ... [3s/3s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [21s/21s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [129s/129s] OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
adiv_corrplot  9.013 11.196  20.444
adiv_boxplot   8.732  0.229   8.997
taxa_stats     6.772  0.116   6.888
taxa_boxplot   5.798  0.096   5.903
stats_corrplot 5.624  0.124   5.747
bdiv_heatmap   5.603  0.086   5.868
taxa_heatmap   5.402  0.084   5.496
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [36s/36s] OK
  Running ‘testthat.r’ [35s/36s]
* checking PDF version of manual ... [10s/10s] OK
* checking HTML version of manual ... [12s/13s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: OK