Package check result: NOTE Check: dependencies in R code, Result: NOTE H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f8f1bcbffa1 in H5I_dec_ref /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f8f1c079543 in H5T__path_find_real /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f8f1c067b0a in H5T__register /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f8f1c04ff3a in H5T__register_int /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f8f1c046bcd in H5T__init_package /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f8f1c03f9d0 in H5T_init /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f8f1b8a60d2 in H5_init_library /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f8f1b8ac2ec in H5open /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f8f1b8963d6 in _H5constants /home/hornik/tmp/scratch/RtmpwhBkAm/R.INSTALL3883fa5799e0f8/rhdf5/src/H5constants.c:52:35 #9 0x7f8f4294825a in R_doDotCall /home/hornik/src/R/src/main/dotcode.c:751:11 #10 0x7f8f429a15c2 in do_dotcall /home/hornik/src/R/src/main/dotcode.c:1437:11 #11 0x7f8f42af32b9 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #12 0x7f8f42aa7914 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #13 0x7f8f42aa604f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #14 0x7f8f42ab07a5 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #15 0x7f8f42aac29c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #16 0x7f8f42aa69cf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #17 0x7f8f42aa69cf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #18 0x7f8f42bea3a7 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #19 0x7f8f42bed1c0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #20 0x7f8f42becfe4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #21 0x7f8f42bed28a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #22 0x5620f6e1edd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #23 0x7f8f41e33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #24 0x7f8f41e33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #25 0x5620f6d3b370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f8f1bcbb489 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f8f1c01ec87 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f8f1bcbabe7 in H5I_clear_type /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f8f1c052502 in H5T_top_term_package /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f8f1b8a71d1 in H5_term_library /home/hornik/tmp/scratch/RtmphgDXKk/R.INSTALL3807221f67f69b/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f8f41e4c260 in __run_exit_handlers stdlib/exit.c:108:8 #6 0x7f8f41e4c319 in exit stdlib/exit.c:138:3 #7 0x7f8f42f9cbdc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #8 0x7f8f42fa6e37 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #9 0x7f8f42bed014 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #10 0x7f8f42bed014 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #11 0x7f8f42bed28a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #12 0x5620f6e1edd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #13 0x7f8f41e33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #14 0x7f8f41e33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #15 0x5620f6d3b370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 Post-processing issues found: File: rbiom-Ex.Rout cleancall.c:110:46: runtime error: call to function cb_progress_done through pointer to incorrect function type 'void (*)(void *)' File: tests/testthat.Rout cleancall.c:110:46: runtime error: call to function cb_progress_done through pointer to incorrect function type 'void (*)(void *)' File: 00check.log H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)'