test_that("biom_merge", { actual <- biom_merge(hmp5[1:2], hmp5[3:5], tree = hmp5$tree) actual$counts <- actual$counts[sort(actual$otus), sort(actual$samples)] expected <- hmp5$clone() expected$counts <- expected$counts[sort(expected$otus), sort(expected$samples)] expect_equal_rbiom(actual, expected) skip_on_cran() expect_error(biom_merge()) expect_error(biom_merge(NA)) expect_error(biom_merge(list())) expect_error(biom_merge(list(NA, NA))) expect_error(biom_merge(min5, min5)) expect_warning(biom_merge(min5[1:2], {x <- min5[3:5]; x$otus %<>% paste0('_'); x})) expect_equal_rbiom(biom_merge(hmp5), hmp5) expect_s3_class(biom_merge(list(min5)), 'rbiom') expect_s3_class(biom_merge(system.file("extdata", "hmp50.bz2", package = "rbiom")), 'rbiom') })