downloading reverse dependencies ... downloading prior3D_0.1.1.tar.gz ... ok installing dependencies ‘COVID19’, ‘geodiv’, ‘highs’, ‘prioritizr’, ‘rasterdiv’, ‘terra’, ‘twdtw’ begin installing package ‘COVID19’ begin installing package ‘twdtw’ begin installing package ‘highs’ begin installing package ‘terra’ * installing *source* package ‘COVID19’ ... ** package ‘COVID19’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (COVID19) * installing *source* package ‘twdtw’ ... ** package ‘twdtw’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptPmBch/R.INSTALL4e01e6ebff2a9/twdtw/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c twdtwcpp.cpp -o twdtwcpp.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c twdtwf90.f90 -o twdtwf90.o twdtwf90.f90:231:2: 231 | 99 continue | 1 Warning: Label 99 at (1) defined but not used [-Wunused-label] g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c twdtwf90_wrapper.cpp -o twdtwf90_wrapper.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o twdtw.so RcppExports.o twdtwcpp.o twdtwf90.o twdtwf90_wrapper.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptPmBch/R.INSTALL4e01e6ebff2a9/twdtw/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-twdtw/00new/twdtw/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twdtw) * installing *source* package ‘highs’ ... ** package ‘highs’ successfully unpacked and MD5 sums checked ** using staged installation Use 'configure' CMAKE VERSION: 'cmake version 3.30.4' arch: 'x86_64' R_ARCH: '' CC: 'gcc-14' CXX: 'g++-14 -std=gnu++17' CXX11: 'g++-14' -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-14 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-14 - skipped -- Detecting C compile features -- Detecting C compile features - done -- IPO / LTO enabled -- Performing Test HIGHS_HAVE_MM_PAUSE -- Performing Test HIGHS_HAVE_MM_PAUSE - Success -- Performing Test HIGHS_HAVE_BUILTIN_CLZ -- Performing Test HIGHS_HAVE_BUILTIN_CLZ - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Performing Test flag_supported -- Performing Test flag_supported - Success -- Looking for a Fortran compiler -- Looking for a Fortran compiler - /usr/bin/gfortran-14 -- The Fortran compiler identification is GNU 14.2.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/gfortran-14 - skipped -- Looking for a CSharp compiler -- Looking for a CSharp compiler - NOTFOUND -- Performing Test NO_OMIT_FRAME_POINTER_FLAG_SUPPORTED -- Performing Test NO_OMIT_FRAME_POINTER_FLAG_SUPPORTED - Success -- Compilation date: 2024-10-14 -- Build shared libraries: OFF -- Build type: RELEASE -- No CSharp support -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (4.1s) -- Generating done (0.0s) -- Build files have been written to: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' [ 0%] Building CXX object 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src/CMakeFiles/libhighs.dir/util/HSet.cpp.o [ 60%] Building CXX object src/CMakeFiles/libhighs.dir/util/HVectorBase.cpp.o [ 61%] Building CXX object src/CMakeFiles/libhighs.dir/util/stringutil.cpp.o [ 62%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/IpxWrapper.cpp.o [ 62%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_factorize.c.o [ 63%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_solve_dense.c.o [ 64%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_build_factors.c.o [ 64%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_factorize_bump.c.o [ 65%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_initialize.c.o [ 65%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_markowitz.c.o [ 66%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_setup_bump.c.o [ 67%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_solve_sparse.c.o [ 67%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_get_factors.c.o [ 68%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_solve_for_update.c.o [ 68%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_condest.c.o [ 69%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_file.c.o /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/ipm/basiclu/lu_file.c: In function ‘lu_file_reappend’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/ipm/basiclu/lu_file.c:80:24: warning: variable ‘room’ set but not used [-Wunused-but-set-variable] 80 | lu_int fmem, used, room, ibeg, iend, pos; | ^~~~ [ 70%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_internal.c.o [ 70%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_matrix_norm.c.o [ 71%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_singletons.c.o [ 72%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_solve_symbolic.c.o [ 72%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_update.c.o [ 73%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_initialize.c.o [ 73%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_solve_sparse.c.o [ 74%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_pivot.c.o /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c: In function ‘lu_pivot_any’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c:186:24: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 186 | lu_int grow, room, found, position; | ^~~~~ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c: In function ‘lu_pivot_small’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c:478:24: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 478 | lu_int grow, room, found, position, col_number; | ^~~~~ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c: In function ‘lu_pivot_singleton_col’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/ipm/basiclu/lu_pivot.c:871:42: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 871 | lu_int j, pos, rpos, put, nz, where, found; | ^~~~~ [ 75%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_solve_dense.c.o [ 75%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/lu_solve_triangular.c.o [ 76%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_object.c.o [ 76%] Building C object src/CMakeFiles/libhighs.dir/ipm/basiclu/basiclu_update.c.o [ 77%] Building C object 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src/CMakeFiles/libhighs.dir/ipm/ipx/guess_basis.cc.o [ 85%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/indexed_vector.cc.o [ 86%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/info.cc.o [ 86%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/ipm.cc.o [ 87%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/ipx_c.cc.o [ 87%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/iterate.cc.o [ 88%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/kkt_solver.cc.o [ 89%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/kkt_solver_basis.cc.o [ 89%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/kkt_solver_diag.cc.o [ 90%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/linear_operator.cc.o [ 91%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/lp_solver.cc.o [ 91%] Building CXX object src/CMakeFiles/libhighs.dir/ipm/ipx/lu_factorization.cc.o [ 92%] Building CXX object 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'/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' [ 99%] Built target libhighs make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' [ 99%] Building CXX object app/CMakeFiles/highs.dir/RunHighs.cpp.o [100%] Linking CXX executable ../bin/highs /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In function ‘assessBounds’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:359:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 359 | if (from_k > to_k) return HighsStatus::kOk; | ^ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:357:12: note: ‘to_k’ was declared here 357 | HighsInt to_k; | ^ In function ‘changeBounds’, inlined from ‘changeLpColBounds’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1608:15, inlined from ‘changeColBoundsInterface’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:662:20: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1628:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1628 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘changeColBoundsInterface’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1626:12: note: ‘to_k’ was declared here 1626 | HighsInt to_k; | ^ In member function ‘setNonbasicStatusInterface’, inlined from ‘setNonbasicStatusInterface’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:833:6, inlined from ‘changeColBoundsInterface’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:666:29: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:863:31: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 863 | for (HighsInt k = from_k; k <= to_k; k++) { | ^ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp: In member function ‘changeColBoundsInterface’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:843:12: note: ‘to_k’ was declared here 843 | HighsInt to_k; | ^ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In function ‘assessCosts.constprop’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:288:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 288 | if (from_k > to_k) return return_status; | ^ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:286:12: note: ‘to_k’ was declared here 286 | HighsInt to_k; | ^ In function ‘changeLpCosts’, inlined from ‘changeCostsInterface’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:621:16, inlined from ‘changeColsCost’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/Highs.cpp:2081:49, inlined from ‘feasibilityPump’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/mip/HighsPrimalHeuristics.cpp:1080:41: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1577:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1577 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘feasibilityPump’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1575:12: note: ‘to_k’ was declared here 1575 | HighsInt to_k; | ^ In function ‘deleteScale’, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:365:16, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1460:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1460 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1458:12: note: ‘to_k’ was declared here 1458 | HighsInt to_k; | ^ In function ‘deleteRowsFromLpVectors’, inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1407:26, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1420:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 1420 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1416:12: note: ‘to_k’ was declared here 1416 | HighsInt to_k; | ^ In member function ‘deleteRows’, inlined from ‘deleteLpRows’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp:1408:26, inlined from ‘deleteRowsInterface’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp:356:15, inlined from ‘deleteRows’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/lp_data/Highs.cpp:2449:22, inlined from ‘removeCuts’ at /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp:473:24: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:605:3: warning: ‘to_k’ may be used uninitialized [-Wmaybe-uninitialized] 605 | if (from_k > to_k) return; | ^ /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp: In member function ‘removeCuts’: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/src/util/HighsSparseMatrix.cpp:603:12: note: ‘to_k’ was declared here 603 | HighsInt to_k; | ^ make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' [100%] Built target highs make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/inst/HiGHS/build' Install the project... -- Install configuration: "RELEASE" -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/bin/highs -- Set non-toolchain portion of runtime path of "/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/bin/highs" to "/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/lib" -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/filereaderlp/builder.hpp -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/filereaderlp/model.hpp -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/filereaderlp/reader.hpp -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/io/Filereader.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/io/FilereaderLp.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/io/FilereaderEms.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/io/FilereaderMps.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/io/HMpsFF.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/io/HMPSIO.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/io/HighsIO.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/io/LoadOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HConst.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HStruct.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsAnalysis.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsInfo.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsInfoDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsLp.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsLpSolverObject.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsLpUtils.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsModelUtils.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsRanging.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsRuntimeOptions.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsSolution.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsSolutionDebug.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsSolve.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/lp_data/HighsStatus.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsCliqueTable.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsCutGeneration.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsConflictPool.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsCutPool.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsDebugSol.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsDomainChange.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsDomain.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsDynamicRowMatrix.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsGFkSolve.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsImplications.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsLpAggregator.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsLpRelaxation.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsMipSolverData.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsMipSolver.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsModkSeparator.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsNodeQueue.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsObjectiveFunction.h -- Installing: /home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs/mip/HighsPathSeparator.h -- Installing: 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14.2.0-3) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include -I/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/include/highs -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c highs_interface.cpp -o highs_interface.o highs_interface.cpp: In function ‘int32_t solver_get_sense(SEXP)’: highs_interface.cpp:259:17: warning: unused variable ‘status’ [-Wunused-variable] 259 | HighsStatus status = highs->getObjectiveSense(sense); | ^~~~~~ g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o highs.so RcppExports.o highs_interface.o -L/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/lib -L/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src/highslib/lib64 -lhighs -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBDL1b3/R.INSTALL4e02063ca3e90/highs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-highs/00new/highs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highs) * installing *source* package ‘terra’ ... ** package ‘terra’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc-14 configure: CXX: g++-14 -std=gnu++17 checking for gdal-config... /usr/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.9.2 checking GDAL version >= 2.0.1... yes checking for gcc... gcc-14 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available for running:... yes configure: GDAL: 3.9.2 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 9.5.0 checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes checking for geos-config... /usr/bin/geos-config checking geos-config usability... yes configure: GEOS: 3.13.0 checking GEOS version >= 3.4.0... yes checking for geos_c.h... yes checking geos: linking with -L/usr/lib/x86_64-linux-gnu -lgeos_c... yes configure: Package CPP flags: -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include configure: Package LIBS: -lproj -L/usr/lib/x86_64-linux-gnu -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1QIcPU/R.INSTALL4e01c3f2502f8/terra/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppFunctions.cpp -o RcppFunctions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppModule.cpp -o RcppModule.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arith.cpp -o arith.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c crs.cpp -o crs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distRaster.cpp -o distRaster.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cpp -o distance.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c extract.cpp -o extract.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c file_utils.cpp -o file_utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c focal.cpp -o focal.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gcp.cpp -o gcp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gdal_algs.cpp -o gdal_algs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gdal_multidimensional.cpp -o gdal_multidimensional.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gdalio.cpp -o gdalio.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c geodesic.c -o geodesic.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c geos_methods.cpp -o geos_methods.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c geosphere.cpp -o geosphere.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c math_utils.cpp -o math_utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mediancut.cpp -o mediancut.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c memory.cpp -o memory.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c movingWindow.cpp -o movingWindow.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ncdf.cpp -o ncdf.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ram.cpp -o ram.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c raster_methods.cpp -o raster_methods.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c raster_stats.cpp -o raster_stats.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rasterize.cpp -o rasterize.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read.cpp -o read.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read_gdal.cpp -o read_gdal.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read_ogr.cpp -o read_ogr.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sample.cpp -o sample.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sort.cpp -o sort.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatBase.cpp -o spatBase.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatDataframe.cpp -o spatDataframe.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatFactor.cpp -o spatFactor.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatRaster.cpp -o spatRaster.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatRasterMultiple.cpp -o spatRasterMultiple.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatSources.cpp -o spatSources.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatTime.cpp -o spatTime.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatVector.cpp -o spatVector.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatVector2.cpp -o spatVector2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c string_utils.cpp -o string_utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vecmath.cpp -o vecmath.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vecmathse.cpp -o vecmathse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vector_methods.cpp -o vector_methods.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c watershed_internal.cpp -o watershed_internal.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write.cpp -o write.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write_gdal.cpp -o write_gdal.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write_ogr.cpp -o write_ogr.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o terra.so RcppExports.o RcppFunctions.o RcppModule.o arith.o crs.o distRaster.o distance.o extract.o file_utils.o focal.o gcp.o gdal_algs.o gdal_multidimensional.o gdalio.o geodesic.o geos_methods.o geosphere.o math_utils.o mediancut.o memory.o movingWindow.o ncdf.o ram.o raster_methods.o raster_stats.o rasterize.o read.o read_gdal.o read_ogr.o sample.o sort.o spatBase.o spatDataframe.o spatFactor.o spatRaster.o spatRasterMultiple.o spatSources.o spatTime.o spatVector.o spatVector2.o string_utils.o vecmath.o vecmathse.o vector_methods.o watershed_internal.o write.o write_gdal.o write_ogr.o -lproj -L/usr/lib/x86_64-linux-gnu -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1QIcPU/R.INSTALL4e01c3f2502f8/terra/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-terra/00new/terra/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘sds’ with signature ‘x="stars"’: no definition for class “stars” in method for ‘sds’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy” in method for ‘svc’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"stars","SpatRasterDataset"’: no definition for class “stars” in method for ‘coerce’ with signature ‘"ggmap","SpatRaster"’: no definition for class “ggmap” in method for ‘coerce’ with signature ‘"sf","SpatRaster"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"sf","SpatVector"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"sfc","SpatVector"’: no definition for class “sfc” in method for ‘coerce’ with signature ‘"sfg","SpatVector"’: no definition for class “sfg” in method for ‘coerce’ with signature ‘"XY","SpatVector"’: no definition for class “XY” in method for ‘coerce’ with signature ‘"im","SpatRaster"’: no definition for class “im” in method for ‘coerce’ with signature ‘"SpatVector","Spatial"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"Spatial","SpatVector"’: no definition for class “Spatial” in method for ‘coerce’ with signature ‘"SpatialGrid","SpatRaster"’: no definition for class “SpatialGrid” in method for ‘coerce’ with signature ‘"SpatialPixels","SpatRaster"’: no definition for class “SpatialPixels” in method for ‘crs’ with signature ‘"sf"’: no definition for class “sf” Creating a generic function for ‘ncol’ from package ‘base’ in package ‘terra’ in method for ‘distance’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf” in method for ‘ext’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘ext’ with signature ‘x="bbox"’: no definition for class “bbox” in method for ‘ext’ with signature ‘x="Extent"’: no definition for class “Extent” in method for ‘ext’ with signature ‘x="Raster"’: no definition for class “Raster” in method for ‘ext’ with signature ‘x="Spatial"’: no definition for class “Spatial” in method for ‘extract’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf” in method for ‘mask’ with signature ‘x="SpatRaster",mask="sf"’: no definition for class “sf” in method for ‘points’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘lines’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘polys’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘polys’ with signature ‘x="leaflet"’: no definition for class “leaflet” in method for ‘lines’ with signature ‘x="leaflet"’: no definition for class “leaflet” in method for ‘points’ with signature ‘x="leaflet"’: no definition for class “leaflet” in method for ‘rast’ with signature ‘x="stars"’: no definition for class “stars” in method for ‘rast’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy” in method for ‘rasterize’ with signature ‘x="sf",y="SpatRaster"’: no definition for class “sf” in method for ‘show’ with signature ‘"Rcpp_SpatDataFrame"’: no definition for class “Rcpp_SpatDataFrame” in method for ‘show’ with signature ‘"Rcpp_SpatCategories"’: no definition for class “Rcpp_SpatCategories” in method for ‘geomtype’ with signature ‘x="Spatial"’: no definition for class “Spatial” Creating a generic function for ‘identical’ from package ‘base’ in package ‘terra’ in method for ‘vect’ with signature ‘x="Spatial"’: no definition for class “Spatial” in method for ‘vect’ with signature ‘x="sf"’: no definition for class “sf” in method for ‘vect’ with signature ‘x="sfc"’: no definition for class “sfc” in method for ‘vect’ with signature ‘x="XY"’: no definition for class “XY” Creating a generic function for ‘unserialize’ from package ‘base’ in package ‘terra’ Creating a generic function for ‘readRDS’ from package ‘base’ in package ‘terra’ ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (terra) begin installing package ‘prioritizr’ begin installing package ‘geodiv’ begin installing package ‘rasterdiv’ * installing *source* package ‘rasterdiv’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rasterdiv) * installing *source* package ‘geodiv’ ... ** package ‘geodiv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp13jndw/R.INSTALL4f21e368bf0f1/geodiv/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sfd.cpp -o sfd.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o geodiv.so RcppExports.o sfd.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp13jndw/R.INSTALL4f21e368bf0f1/geodiv/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-geodiv/00new/geodiv/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geodiv) * installing *source* package ‘prioritizr’ ... ** package ‘prioritizr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsjSI9T/R.INSTALL4f21fb377059/prioritizr/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c functions.cpp -o functions.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c optimization_problem.cpp -o optimization_problem.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_absolute_amount_held_by_solution.cpp -o rcpp_absolute_amount_held_by_solution.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_add_linear_constraints.cpp -o rcpp_add_linear_constraints.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_add_rij_data.cpp -o rcpp_add_rij_data.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_add_zones_constraints.cpp -o rcpp_add_zones_constraints.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_asym_connectivity_penalties.cpp -o rcpp_apply_asym_connectivity_penalties.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_boundary_penalties.cpp -o rcpp_apply_boundary_penalties.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_bounded_constraints.cpp -o rcpp_apply_bounded_constraints.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_connectivity_penalties.cpp -o rcpp_apply_connectivity_penalties.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_contiguity_constraints.cpp -o rcpp_apply_contiguity_constraints.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_decisions.cpp -o rcpp_apply_decisions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_feature_contiguity_constraints.cpp -o rcpp_apply_feature_contiguity_constraints.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_feature_weights.cpp -o rcpp_apply_feature_weights.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_linear_penalties.cpp -o rcpp_apply_linear_penalties.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_locked_constraints.cpp -o rcpp_apply_locked_constraints.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_max_cover_objective.cpp -o rcpp_apply_max_cover_objective.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_max_features_objective.cpp -o rcpp_apply_max_features_objective.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_max_phylo_objective.cpp -o rcpp_apply_max_phylo_objective.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_max_utility_objective.cpp -o rcpp_apply_max_utility_objective.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_min_largest_shortfall_objective.cpp -o rcpp_apply_min_largest_shortfall_objective.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_min_set_objective.cpp -o rcpp_apply_min_set_objective.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_min_shortfall_objective.cpp -o rcpp_apply_min_shortfall_objective.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_apply_neighbor_constraints.cpp -o rcpp_apply_neighbor_constraints.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_asym_connectivity.cpp -o rcpp_asym_connectivity.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_boundary.cpp -o rcpp_boundary.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_branch_matrix.cpp -o rcpp_branch_matrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_connectivity.cpp -o rcpp_connectivity.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_ferrier_score.cpp -o rcpp_ferrier_score.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_forbid_solution.cpp -o rcpp_forbid_solution.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DARMA_64BIT_WORD=1 -DARMA_NO_DEBUG=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_list_to_matrix_indices.cpp -o rcpp_list_to_matrix_indices.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o prioritizr.so RcppExports.o functions.o init.o optimization_problem.o rcpp_absolute_amount_held_by_solution.o rcpp_add_linear_constraints.o rcpp_add_rij_data.o rcpp_add_zones_constraints.o rcpp_apply_asym_connectivity_penalties.o rcpp_apply_boundary_penalties.o rcpp_apply_bounded_constraints.o rcpp_apply_connectivity_penalties.o rcpp_apply_contiguity_constraints.o rcpp_apply_decisions.o rcpp_apply_feature_contiguity_constraints.o rcpp_apply_feature_weights.o rcpp_apply_linear_penalties.o rcpp_apply_locked_constraints.o rcpp_apply_max_cover_objective.o rcpp_apply_max_features_objective.o rcpp_apply_max_phylo_objective.o rcpp_apply_max_utility_objective.o rcpp_apply_min_largest_shortfall_objective.o rcpp_apply_min_set_objective.o rcpp_apply_min_shortfall_objective.o rcpp_apply_neighbor_constraints.o rcpp_asym_connectivity.o rcpp_boundary.o rcpp_branch_matrix.o rcpp_connectivity.o rcpp_ferrier_score.o rcpp_forbid_solution.o rcpp_list_to_matrix_indices.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsjSI9T/R.INSTALL4f21fb377059/prioritizr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-prioritizr/00new/prioritizr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prioritizr) checking rasterdiv_0.3.5.tar.gz ... checking prior3D_0.1.1.tar.gz ... Depends: Package: rasterdiv Depends: R (>= 4.0.0) Imports: doParallel, foreach, ggforce, ggplot2, methods, proxy, progress, terra, twdtw, viridis Timings: user system elapsed rasterdiv 116.824 6.982 125.852 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: rasterdiv ... OK rdepends_prior3D ... OK