Package check result: OK Changes to worse in reverse depends: Package: belg Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘belg1.Rmd’ using rmarkdown Quitting from belg1.Rmd:49-62 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'belg1.Rmd' failed with diagnostics: Problem while computing aesthetics. ℹ Error occurred in the 2nd layer. Caused by error: ! object 'value' not found --- failed re-building ‘belg1.Rmd’ --- re-building ‘belg2.Rmd’ using rmarkdown --- finished re-building ‘belg2.Rmd’ SUMMARY: processing the following file failed: ‘belg1.Rmd’ Error: Vignette re-building failed. Execution halted Package: isocat Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘isocat.Rmd’ using rmarkdown Quitting from isocat.Rmd:61-83 [plot_isoscape_data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'isocat.Rmd' failed with diagnostics: Problem while computing aesthetics. ℹ Error occurred in the 2nd layer. Caused by error: ! object 'value' not found --- failed re-building ‘isocat.Rmd’ SUMMARY: processing the following file failed: ‘isocat.Rmd’ Error: Vignette re-building failed. Execution halted Package: SDMtune Check: tests New result: ERROR Running ‘testthat.R’ [17s/17s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(SDMtune) _____ ____ __ ___ __ / ___/ / __ \ / |/ // /_ __ __ ____ ___ \__ \ / / / // /|_/ // __// / / // __ \ / _ \ ___/ // /_/ // / / // /_ / /_/ // / / // __/ /____//_____//_/ /_/ \__/ \__,_//_/ /_/ \___/ version 1.3.2 To cite this package in publications type: citation("SDMtune"). > > test_check("SDMtune") Scale for fill is already present. Adding another scale for fill, which will replace the existing scale. Coordinate system already present. Adding new coordinate system, which will replace the existing one. Scale for fill is already present. Adding another scale for fill, which will replace the existing scale. Coordinate system already present. Adding new coordinate system, which will replace the existing one. Scale for fill is already present. Adding another scale for fill, which will replace the existing scale. Coordinate system already present. Adding new coordinate system, which will replace the existing one. Scale for fill is already present. Adding another scale for fill, which will replace the existing scale. Coordinate system already present. Adding new coordinate system, which will replace the existing one. [ FAIL 3 | WARN 6 | SKIP 55 | PASS 314 ] ══ Skipped tests (55) ══════════════════════════════════════════════════════════ • On CRAN (55): 'test-ANN-class.R:1:1', 'test-BRT-class.R:1:1', 'test-Maxent-class.R:3:3', 'test-Maxnet-class.R:3:3', 'test-RF-class.R:1:1', 'test-SDMmodel-class.R:3:3', 'test-SDMmodel2MaxEnt.R:13:3', 'test-SDMmodelCV-class.R:3:3', 'test-SDMtune-class.R:42:3', 'test-SWD-class.R:3:3', 'test-addSamplesToBg.R:22:3', 'test-aicc.R:1:1', 'test-auc.R:1:1', 'test-checkMaxentInstallation.R:2:3', 'test-confMatrix.R:1:1', 'test-convertFolds.R:126:3', 'test-corVar.R:4:3', 'test-doJk.R:1:1', 'test-gridSearch.R:1:1', 'test-maxentTh.R:2:3', 'test-maxentVarImp.R:2:3', 'test-mergeSWD.R:34:3', 'test-mergeSWD.R:46:3', 'test-modelReport.R:1:1', 'test-optimizeModel.R:1:1', 'test-plotJk.R:36:3', 'test-plotPA.R:27:3', 'test-plotPA.R:39:3', 'test-plotPred.R:6:3', 'test-plotPred.R:26:3', 'test-plotResponse.R:1:1', 'test-predct-Maxnet.R:1:1', 'test-predict-ANN.R:1:1', 'test-predict-BRT.R:1:1', 'test-predict-Maxent.R:1:1', 'test-predict-RF.R:1:1', 'test-predict-SDMmodel.R:1:1', 'test-predict-SDMmodelCV.R:1:1', 'test-prepareSWD.R:1:1', 'test-randomFolds.R:4:3', 'test-randomSearch.R:1:1', 'test-reduceVar.R:1:1', 'test-swd2csv.R:30:3', 'test-thinData.R:1:1', 'test-train.R:1:1', 'test-trainANN.R:1:1', 'test-trainBRT.R:1:1', 'test-trainMaxent.R:1:1', 'test-trainMaxnet.R:1:1', 'test-trainRF.R:1:1', 'test-trainValTest.R:4:3', 'test-tss.R:1:1', 'test-utils.R:1:1', 'test-varImp.R:1:1', 'test-varSel.R:1:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plotPA.R:12:3'): The values are correct and the file is saved ── p$data$value (`actual`) and c(FALSE, TRUE) (`expected`) don't have the same values. * Only in `expected`: FALSE, TRUE ── Failure ('test-plotPA.R:23:3'): The values are correct and the file is saved ── nrow(p$data) (`actual`) not equal to 250000 (`expected`). `actual` is NULL `expected` is a double vector (250000) ── Failure ('test-plotPred.R:20:3'): The values are correct ──────────────────── nrow(p$data) (`actual`) not equal to 250000 (`expected`). `actual` is NULL `expected` is a double vector (250000) [ FAIL 3 | WARN 6 | SKIP 55 | PASS 314 ] Error: Test failures Execution halted