* using log directory ‘/srv/hornik/tmp/CRAN_pretest/rangr.Rcheck’ * using R Under development (unstable) (2024-10-28 r87274) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.1 (1) Debian flang-new version 19.1.1 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘rangr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rangr’ version ‘1.0.5’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/5s] NOTE Maintainer: ‘Katarzyna Markowska ’ New submission Possibly misspelled words in DESCRIPTION: toolset (10:48) Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Found the following (possibly) invalid URLs: URL: https://codecov.io/gh/ropensci/rangr (moved to https://app.codecov.io/gh/ropensci/rangr) From: README.md Status: 301 Message: Moved Permanently For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. Found the following URLs which should use \doi (with the DOI name only): File ‘growth.Rd’: https://doi.org/10.1006/jtbi.2002.3084 http://dx.doi.org/10.1098/rstl.1825.0026 http://dx.doi.org/10.1139/f54-039 https://doi.org/10.1890/14-1487.1 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rangr’ can be installed ... [9s/9s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Author field differs from that derived from Authors@R Author: ‘Katarzyna Markowska [aut, cre], Lechosław Kuczyński [aut], Tad Dallas [rev] (@taddallas), Joanne Potts [rev] (@TheAnalyticalEdge)’ Authors@R: ‘Katarzyna Markowska [aut, cre], Lechosław Kuczyński [aut], Tad Dallas [rev] (github: @taddallas), Joanne Potts [rev] (github: @TheAnalyticalEdge)’ * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s/3s] OK * checking whether the package can be loaded with stated dependencies ... [3s/3s] OK * checking whether the package can be unloaded cleanly ... [3s/3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK * checking whether the namespace can be unloaded cleanly ... [3s/3s] OK * checking loading without being on the library search path ... [3s/3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [14s/14s] NOTE sq_disp: no visible binding for global variable ‘id_within’ sq_disp: no visible binding for global variable ‘dlist’ sq_disp: no visible binding for global variable ‘id’ sq_disp: no visible binding for global variable ‘dist_resolution’ sq_disp: no visible binding for global variable ‘dist_bin’ sq_disp: no visible binding for global variable ‘dens_dep’ sq_disp: no visible binding for global variable ‘ncells_in_circle’ sq_disp: no visible binding for global variable ‘border’ sq_disp: no visible binding for global variable ‘planar’ Undefined global functions or variables: border dens_dep dist_bin dist_resolution dlist id id_within ncells_in_circle planar * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [10s/10s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [19s/19s] OK Running ‘testthat.R’ [19s/19s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [21s/21s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs