* using log directory 'd:/RCompile/CRANincoming/R-devel/rQSAR.Rcheck'
* using R Under development (unstable) (2024-03-25 r86192 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'rQSAR/DESCRIPTION' ... OK
* this is package 'rQSAR' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Oche Ambrose George <ocheab1@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  MLR (2:48, 8:396)
  PLS (2:53, 8:425)
  QSAR (2:8, 8:60, 8:348)
  rQSAR (8:280)
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'rcdk', 'ggplot2', 'caret', 'pls', 'randomForest', 'tibble',
  'gridExtra', 'leaps', 'corrplot', 'dplyr'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rQSAR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] NOTE
build_qsar_models: no visible global function definition for
  'createFolds'
correlation_plots : <anonymous>: no visible global function definition
  for 'ggplot'
correlation_plots : <anonymous>: no visible global function definition
  for 'aes'
correlation_plots : <anonymous>: no visible binding for global variable
  'Predicted'
correlation_plots : <anonymous>: no visible binding for global variable
  'Actual'
correlation_plots : <anonymous>: no visible global function definition
  for 'geom_point'
correlation_plots : <anonymous>: no visible global function definition
  for 'geom_smooth'
correlation_plots : <anonymous>: no visible global function definition
  for 'labs'
correlation_plots : <anonymous>: no visible global function definition
  for 'theme_minimal'
generate_descriptors_from_sdf: no visible global function definition
  for 'load.molecules'
generate_descriptors_from_sdf: no visible global function definition
  for 'get.desc.names'
generate_descriptors_from_sdf: no visible global function definition
  for 'eval.desc'
residual_plots : <anonymous>: no visible global function definition for
  'ggplot'
residual_plots : <anonymous>: no visible global function definition for
  'aes'
residual_plots : <anonymous>: no visible binding for global variable
  'Predicted'
residual_plots : <anonymous>: no visible binding for global variable
  'Residuals'
residual_plots : <anonymous>: no visible global function definition for
  'geom_point'
residual_plots : <anonymous>: no visible global function definition for
  'geom_hline'
residual_plots : <anonymous>: no visible global function definition for
  'labs'
residual_plots : <anonymous>: no visible global function definition for
  'theme_minimal'
Undefined global functions or variables:
  Actual Predicted Residuals aes createFolds eval.desc geom_hline
  geom_point geom_smooth get.desc.names ggplot labs load.molecules
  theme_minimal
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'QSAR_Tutorials.Rmd' using rmarkdown

Quitting from lines 35-42 [unnamed-chunk-1] (QSAR_Tutorials.Rmd)
Error: processing vignette 'QSAR_Tutorials.Rmd' failed with diagnostics:
D:/QSAR DATA/rQSAR/inst/sample.sdf: Does not exist
--- failed re-building 'QSAR_Tutorials.Rmd'

SUMMARY: processing the following file failed:
  'QSAR_Tutorials.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [12s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 3 NOTEs