* using log directory ‘/srv/hornik/tmp/CRAN_pretest/rLakeHabitat.Rcheck’ * using R Under development (unstable) (2025-03-26 r88060) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘rLakeHabitat/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rLakeHabitat’ version ‘1.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/5s] NOTE Maintainer: ‘Tristan Blechinger ’ New submission Possibly misspelled words in DESCRIPTION: Bathymetry (3:20) DEMs (16:270) Secchi (16:461) bathymetric (16:21) epliminion (16:214) gstat (16:108) hypolimnion (16:239) metalimnion (16:226) photic (16:492) terra (16:118) thermocline (16:505) Found the following (possibly) invalid URLs: URL: https://gitlab.com/tristanblechinger/rLakeHabitat (moved to https://gitlab.com/tristanblechinger/rlakehabitat) From: DESCRIPTION Status: 301 Message: Moved Permanently URL: https://gitlab.com/tristanblechinger/rLakeHabitat/issues (moved to https://gitlab.com/tristanblechinger/rlakehabitat/-/issues) From: DESCRIPTION Status: 301 Message: Moved Permanently For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rLakeHabitat’ can be installed ... [13s/13s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [4s/4s] OK * checking whether the package can be loaded with stated dependencies ... [4s/4s] OK * checking whether the package can be unloaded cleanly ... [4s/4s] OK * checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK * checking whether the namespace can be unloaded cleanly ... [4s/4s] OK * checking loading without being on the library search path ... [4s/4s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [19s/19s] NOTE animBathy: no visible binding for global variable ‘lyr1’ animBathy: no visible binding for global variable ‘wlf’ animBathy: no visible binding for global variable ‘x’ animBathy: no visible binding for global variable ‘y’ bathyMap: no visible binding for global variable ‘x’ bathyMap: no visible binding for global variable ‘y’ bathyMap: no visible binding for global variable ‘lyr1’ calcLittoral: no visible binding for global variable ‘lit_area’ calcLittoral: no visible binding for global variable ‘tot_area’ calcVolume: no visible binding for global variable ‘tot_vol_m3’ calcVolume: no visible binding for global variable ‘epi_vol_m3’ calcVolume: no visible binding for global variable ‘hyp_vol_m3’ calcVolume: no visible binding for global variable ‘tot_vol_acft’ calcVolume: no visible binding for global variable ‘epi_vol_acft’ calcVolume: no visible binding for global variable ‘hyp_vol_acft’ calcVolume: no visible binding for global variable ‘perc_epi_tot’ calcVolume: no visible binding for global variable ‘met_vol_m3’ calcVolume: no visible binding for global variable ‘met_vol_acft’ crossValidate: no visible binding for global variable ‘group’ crossValidate: no visible binding for global variable ‘fold’ crossValidate: no visible binding for global variable ‘.’ crossValidate: no visible binding for global variable ‘zpred’ estThermo: no visible binding for global variable ‘Thermo’ estThermo: no visible binding for global variable ‘.’ estThermo: no visible binding for global variable ‘Site’ estThermo: no visible binding for global variable ‘Date’ littoralVol: no visible binding for global variable ‘tot_area’ littoralVol: no visible binding for global variable ‘lit_area’ littoralVol: no visible binding for global variable ‘pel_area’ littoralVol: no visible binding for global variable ‘tot_vol_m3’ littoralVol: no visible binding for global variable ‘lit_vol_m3’ littoralVol: no visible binding for global variable ‘pel_vol_m3’ littoralVol: no visible binding for global variable ‘tot_vol_acft’ littoralVol: no visible binding for global variable ‘lit_vol_acft’ littoralVol: no visible binding for global variable ‘pel_vol_acft’ littoralVol: no visible binding for global variable ‘perc_lit_tot’ trueSA: no visible binding for global variable ‘lit_area’ trueSA: no visible binding for global variable ‘tot_area’ Undefined global functions or variables: . Date Site Thermo epi_vol_acft epi_vol_m3 fold group hyp_vol_acft hyp_vol_m3 lit_area lit_vol_acft lit_vol_m3 lyr1 met_vol_acft met_vol_m3 pel_area pel_vol_acft pel_vol_m3 perc_epi_tot perc_lit_tot tot_area tot_vol_acft tot_vol_m3 wlf x y zpred * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [25s/25s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed animBathy 11.688 0.207 11.899 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [15s/15s] OK Running ‘testthat.R’ [15s/15s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s/1s] OK * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘gganim_plot0001.png’ ‘gganim_plot0002.png’ ‘gganim_plot0003.png’ ‘gganim_plot0004.png’ ‘gganim_plot0005.png’ ‘gganim_plot0006.png’ ‘gganim_plot0007.png’ ‘gganim_plot0008.png’ ‘gganim_plot0009.png’ ‘gganim_plot0010.png’ ‘gganim_plot0011.png’ ‘gganim_plot0012.png’ ‘gganim_plot0013.png’ ‘gganim_plot0014.png’ ‘gganim_plot0015.png’ ‘gganim_plot0016.png’ ‘gganim_plot0017.png’ ‘gganim_plot0018.png’ ‘gganim_plot0019.png’ ‘gganim_plot0020.png’ ‘gganim_plot0021.png’ ‘gganim_plot0022.png’ ‘gganim_plot0023.png’ ‘gganim_plot0024.png’ ‘gganim_plot0025.png’ ‘gganim_plot0026.png’ ‘gganim_plot0027.png’ ‘gganim_plot0028.png’ ‘gganim_plot0029.png’ ‘gganim_plot0030.png’ ‘gganim_plot0031.png’ ‘gganim_plot0032.png’ ‘gganim_plot0033.png’ ‘gganim_plot0034.png’ ‘gganim_plot0035.png’ ‘gganim_plot0036.png’ ‘gganim_plot0037.png’ ‘gganim_plot0038.png’ ‘gganim_plot0039.png’ ‘gganim_plot0040.png’ ‘gganim_plot0041.png’ ‘gganim_plot0042.png’ ‘gganim_plot0043.png’ ‘gganim_plot0044.png’ ‘gganim_plot0045.png’ ‘gganim_plot0046.png’ ‘gganim_plot0047.png’ ‘gganim_plot0048.png’ ‘gganim_plot0049.png’ ‘gganim_plot0050.png’ ‘gganim_plot0051.png’ ‘gganim_plot0052.png’ ‘gganim_plot0053.png’ ‘gganim_plot0054.png’ ‘gganim_plot0055.png’ ‘gganim_plot0056.png’ ‘gganim_plot0057.png’ ‘gganim_plot0058.png’ ‘gganim_plot0059.png’ ‘gganim_plot0060.png’ ‘gganim_plot0061.png’ ‘gganim_plot0062.png’ ‘gganim_plot0063.png’ ‘gganim_plot0064.png’ ‘gganim_plot0065.png’ ‘gganim_plot0066.png’ ‘gganim_plot0067.png’ ‘gganim_plot0068.png’ ‘gganim_plot0069.png’ ‘gganim_plot0070.png’ ‘gganim_plot0071.png’ ‘gganim_plot0072.png’ ‘gganim_plot0073.png’ ‘gganim_plot0074.png’ ‘gganim_plot0075.png’ ‘gganim_plot0076.png’ ‘gganim_plot0077.png’ ‘gganim_plot0078.png’ ‘gganim_plot0079.png’ ‘gganim_plot0080.png’ ‘gganim_plot0081.png’ ‘gganim_plot0082.png’ ‘gganim_plot0083.png’ ‘gganim_plot0084.png’ ‘gganim_plot0085.png’ ‘gganim_plot0086.png’ ‘gganim_plot0087.png’ ‘gganim_plot0088.png’ ‘gganim_plot0089.png’ ‘gganim_plot0090.png’ ‘gganim_plot0091.png’ ‘gganim_plot0092.png’ ‘gganim_plot0093.png’ ‘gganim_plot0094.png’ ‘gganim_plot0095.png’ ‘gganim_plot0096.png’ ‘gganim_plot0097.png’ ‘gganim_plot0098.png’ ‘gganim_plot0099.png’ ‘gganim_plot0100.png’ * checking for detritus in the temp directory ... OK * DONE Status: 4 NOTEs