* installing *source* package 'rGEDIsimulator' ... ** this is package 'rGEDIsimulator' version '0.3.0' ** using staged installation configure.win: loading site script /usr/local/etc/config.site checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking build system type... x86_64-pc-msys checking host system type... x86_64-pc-msys checking ... checking for ld used by gcc... /x86_64-w64-mingw32.static.posix/bin/ld checking if the linker (/x86_64-w64-mingw32.static.posix/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking 32-bit host C ABI... no checking how to run the C preprocessor... gcc -E checking for egrep -e... /usr/bin/grep -E checking for ELF binary format... no checking for the common suffixes of directories in the library search path... lib,lib,lib checking for libgsl... no checking for gsl-config... /x86_64-w64-mingw32.static.posix/bin/gsl-config checking for GSL - version >= 0.1... yes checking for gdal-config... /x86_64-w64-mingw32.static.posix/bin/gdal-config checking for GDAL library... Removing .lib suffix from GDAL LDFLAGS and DEP_LDFLAGS yes checking for OGR support in GDAL library... yes checking for pkg-config... /x86_64-w64-mingw32.static.posix/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for SZIP / libaec library... checking for libaec sz >= 1.0... no checking for SZ_BufftoBuffCompress in -lsz... yes yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... yes checking for a sed that does not truncate output... sed checking for gawk... gawk checking for grep that handles long lines and -e... /usr/bin/grep checking for h5cc... no checking for h5pcc... no checking for HDF5 type... neither checking for HDF5 libraries... checking for library containing H5open... -lhdf5 configure.win: creating ./config.status config.status: creating src/Makevars config.status: creating src/Makevars.ucrt ** libs using C compiler: 'gcc.exe (GCC) 14.2.0' using C++ compiler: 'g++.exe (GCC) 14.2.0' gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c tools/functionWrappers.c -o tools/functionWrappers.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c libclidar/libLasProcess.c -o libclidar/libLasProcess.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c libclidar/libLasRead.c -o libclidar/libLasRead.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c libclidar/gaussFit.c -o libclidar/gaussFit.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c libclidar/libLidVoxel.c -o libclidar/libLidVoxel.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c libclidar/libTLSread.c -o libclidar/libTLSread.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c libclidar/libLidarHDF.c -o libclidar/libLidarHDF.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c gedisimulator/gediIO.c -o gedisimulator/gediIO.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c gedisimulator/photonCount.c -o gedisimulator/photonCount.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c libclidar/libOctree.c -o libclidar/libOctree.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c gedisimulator/gediNoise.c -o gedisimulator/gediNoise.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c cmpfit-1.5/mpfit.c -o cmpfit-1.5/mpfit.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c tools/tools.c -o tools/tools.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c gediMetrics.c -o gediMetrics.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c gediSimulator.c -o gediSimulator.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c argParse.c -o argParse.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -I/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/include -DDLLEXPORT -D__STDC_FORMAT_MACROS -DUSEPHOTON -Igedisimulator -Itools -Icmpfit-1.5 -Ilibclidar -I. -include tools/functionWrappers.h -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++ -std=gnu++17 -shared -s -static-libgcc -o rGEDIsimulator.dll tmp.def tools/functionWrappers.o libclidar/libLasProcess.o libclidar/libLasRead.o libclidar/gaussFit.o libclidar/libLidVoxel.o libclidar/libTLSread.o libclidar/libLidarHDF.o gedisimulator/gediIO.o gedisimulator/photonCount.o libclidar/libOctree.o gedisimulator/gediNoise.o cmpfit-1.5/mpfit.o tools/tools.o gediMetrics.o gediSimulator.o argParse.o registerDynamicSymbol.o -lhdf5 -lz -L/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/lib -lgsl -lgslcblas -lm -L/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/lib -lgdal -larmadillo -lopenblas -lgomp -lmingwthrd -lgfortran -lquadmath -lgeotiff -lpoppler -lharfbuzz -lfreetype -lharfbuzz_too -lfreetype_too -lglib-2.0 -lintl -latomic -lwinmm -lole32 -lshlwapi -luuid -lpng -lgif -lnetcdf -lhdf5_hl -lblosc -llz4 -lgta -lmfhdf -lportablexdr -ldf -lkea -lhdf5_cpp -lhdf5 -ldl -lwsock32 -lsz -lopenjp2 -llcms2 -lpng16 -lpcre2-8 -lspatialite -ladvapi32 -lbrotlidec -lbrotlicommon -lssh2 -lgcrypt -lgpg-error -lnghttp2 -lpsl -lidn2 -lunistring -lcharset -lmysqlclient -lpq -lpgcommon -lpgport -lpthread -lwldap32 -lshell32 -lsecur32 -lodbc32 -lodbccp32 -lfreexl -liconv -lminizip -lbz2 -lbcrypt -lssl -lcrypto -lws2_32 -lgdi32 -lcrypt32 -lexpat -lxml2 -lgeos_c -lgeos -lpsapi -lproj -lshell32 -lole32 -lsqlite3 -ltiff -lwebp -lsharpyuv -lm -lzstd -llzma -lLerc -ljpeg -ldeflate -lz -lcurl -ljson-c -lstdc++ -lhdf5 -lz -L/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/lib -lgsl -lgslcblas -lm -L/usr/lib/mxe/usr/x86_64-w64-mingw32.static.posix/lib -lgdal -larmadillo -lopenblas -lgomp -lmingwthrd -lgfortran -lquadmath -lgeotiff -lpoppler -lharfbuzz -lfreetype -lharfbuzz_too -lfreetype_too -lglib-2.0 -lintl -latomic -lwinmm -lole32 -lshlwapi -luuid -lpng -lgif -lnetcdf -lhdf5_hl -lblosc -llz4 -lgta -lmfhdf -lportablexdr -ldf -lkea -lhdf5_cpp -lhdf5 -ldl -lwsock32 -lsz -lopenjp2 -llcms2 -lpng16 -lpcre2-8 -lspatialite -ladvapi32 -lbrotlidec -lbrotlicommon -lssh2 -lgcrypt -lgpg-error -lnghttp2 -lpsl -lidn2 -lunistring -lcharset -lmysqlclient -lpq -lpgcommon -lpgport -lpthread -lwldap32 -lshell32 -lsecur32 -lodbc32 -lodbccp32 -lfreexl -liconv -lminizip -lbz2 -lbcrypt -lssl -lcrypto -lws2_32 -lgdi32 -lcrypt32 -lexpat -lxml2 -lgeos_c -lgeos -lpsapi -lproj -lshell32 -lole32 -lsqlite3 -ltiff -lwebp -lsharpyuv -lm -lzstd -llzma -lLerc -ljpeg -ldeflate -lz -lcurl -ljson-c -lstdc++ -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-rGEDIsimulator/00new/rGEDIsimulator/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rGEDIsimulator)