* using log directory 'd:/RCompile/CRANincoming/R-devel/quollr.Rcheck'
* using R Under development (unstable) (2025-07-21 r88439 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'quollr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quollr' version '0.3.5'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [13s] NOTE
Maintainer: 'Jayani P. Gamage <jayanilakshika76@gmail.com>'

Possibly misspelled words in DESCRIPTION:
  NLDR (17:57, 21:9)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'quollr' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 14.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    '2d.R' 'gen_diffbin1_errors.Rd' 'geom_hexgrid.Rd' 'geom_trimesh.R'
    'geom_trimesh.Rd' 'highd.R' 'link_plots.R' 'model.R' 'parameters.R'
    'prediction.R' 'projection.R' 'stat_hexgrid.R' 'stat_trimesh.R'
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [13s] ERROR
Running examples in 'quollr-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: show_error_link_plots
> ### Title: Visualise the model overlaid on high-dimensional data along with
> ###   2-D wireframe model and error.
> ### Aliases: show_error_link_plots
> 
> ### ** Examples
> 
> model_error <- augment(highd_data = scurve, model_highd = scurve_model_obj$model_highd,
+ model_2d = scurve_model_obj$model_2d)
> df_exe <- comb_all_data_model_error(highd_data = scurve, nldr_data = scurve_umap,
+ model_highd = scurve_model_obj$model_highd, model_2d = scurve_model_obj$model_2d,
+ error_data = model_error)
> edge_data <- scurve_model_obj$trimesh_data
> show_error_link_plots(point_data = df_exe, edge_data = edge_data)
Error in switch(units, `in` = res, cm = res/2.54, mm = res/25.4, px = 1) *  : 
  non-numeric argument to binary operator
Calls: show_error_link_plots ... ggplotly -> ggplotly.ggplot -> gg2list -> dev_fun -> .geometry
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [10s] ERROR
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(quollr)
  > library(vdiffr)
  > 
  > test_check("quollr")
  New names:
  * `` -> `...1`
  * `` -> `...2`
  New names:
  * `` -> `...1`
  * `` -> `...2`
  [ FAIL 2 | WARN 0 | SKIP 30 | PASS 6 ]
  
  ══ Skipped tests (30) ══════════════════════════════════════════════════════════
  • On CRAN (30): 'test-2d.R:6:3', 'test-2d.R:16:3', 'test-2d.R:26:3',
    'test-2d.R:35:3', 'test-2d.R:43:3', 'test-2d.R:49:3', 'test-2d.R:56:3',
    'test-2d.R:69:3', 'test-2d.R:80:3', 'test-2d.R:94:3', 'test-2d.R:102:3',
    'test-2d.R:115:3', 'test-2d.R:122:3', 'test-data_processing.R:2:3',
    'test-geom_hexgrid.R:5:3', 'test-geom_trimesh.R:6:3', 'test-highd.R:4:3',
    'test-highd.R:11:3', 'test-link_plots.R:3:3', 'test-link_plots.R:27:3',
    'test-model.R:3:3', 'test-parameters.R:3:3', 'test-parameters.R:11:3',
    'test-prediction.R:3:3', 'test-prediction.R:11:3', 'test-prediction.R:20:3',
    'test-prediction.R:28:3', 'test-projection.R:7:3', 'test-projection.R:20:3',
    'test-projection.R:45:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-link_plots.R:15:3'): show_link_plots() works ───────────────────
  Error in `switch(units, `in` = res, cm = res/2.54, mm = res/25.4, px = 1) * 
      width`: non-numeric argument to binary operator
  Backtrace:
       ▆
    1. └─quollr::show_link_plots(point_data = df_exe, edge_data = edge_data) at test-link_plots.R:15:3
    2.   ├─plotly::config(...)
    3.   │ └─plotly:::modify_list(p$x$config, args)
    4.   │   ├─utils::modifyList(x %||% list(), y %||% list(), ...)
    5.   │   │ └─base::stopifnot(is.list(x), is.list(val))
    6.   │   └─x %||% list()
    7.   ├─plotly::highlight(...)
    8.   ├─plotly::style(...)
    9.   │ └─plotly::plotly_build(p)
   10.   ├─plotly::ggplotly(nldr_plt, width = "600", height = "600", tooltip = "none")
   11.   └─plotly:::ggplotly.ggplot(...)
   12.     └─plotly::gg2list(...)
   13.       └─grDevices (local) dev_fun(...)
   14.         └─grDevices:::.geometry(width, height, units, res)
  ── Error ('test-link_plots.R:44:3'): show_link_plots() works ───────────────────
  Error in `switch(units, `in` = res, cm = res/2.54, mm = res/25.4, px = 1) * 
      width`: non-numeric argument to binary operator
  Backtrace:
       ▆
    1. └─quollr::show_error_link_plots(point_data = df_exe, edge_data = edge_data) at test-link_plots.R:44:3
    2.   ├─plotly::config(...)
    3.   │ └─plotly:::modify_list(p$x$config, args)
    4.   │   ├─utils::modifyList(x %||% list(), y %||% list(), ...)
    5.   │   │ └─base::stopifnot(is.list(x), is.list(val))
    6.   │   └─x %||% list()
    7.   ├─plotly::highlight(...)
    8.   ├─plotly::style(...)
    9.   │ └─plotly::plotly_build(p)
   10.   ├─plotly::ggplotly(error_plt, width = "400", height = "400", tooltip = "none")
   11.   └─plotly:::ggplotly.ggplot(...)
   12.     └─plotly::gg2list(...)
   13.       └─grDevices (local) dev_fun(...)
   14.         └─grDevices:::.geometry(width, height, units, res)
  
  [ FAIL 2 | WARN 0 | SKIP 30 | PASS 6 ]
  Deleting unused snapshots:
  • geom_hexgrid/geom-hexgrid-basic-with-all-bin-centroids.svg
  • geom_trimesh/geom-hexgrid-basic-with-all-bin-centroids.svg
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [17s] OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 2 NOTEs