R Under development (unstable) (2026-01-06 r89281 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(quartify)
> 
> test_check("quartify")
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983821305e2e.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983821305e2e.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983821305e2e.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983821305e2e.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198382bb51430.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198382bb51430.html'
Saving _problems/test-addins-64.R
Saving _problems/test-addins-65.R
Saving _problems/test-addins-66.R
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198385b62720f.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198385b62720f.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file19838736c7476.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file19838736c7476.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198385651200e.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198385651200e.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198381b96e3d.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198381b96e3d.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983875ff44ce.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983875ff44ce.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983814cbef9.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983814cbef9.html'
x Input file does not exist: 'nonexistent.R'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198385adf5cf0.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198385adf5cf0.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file19838100d6e9a.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file19838100d6e9a.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198381bca12a9.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198381bca12a9.html'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198387be1131c.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983844fa1393.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983844fa1393.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198381f39634c.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198387a3d1622.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198385d97255a.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198385616680b.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198384a996c2d.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198382be616a3.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198387752dbb.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file19838673614cf.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198383ff27640.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198381617215d.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file1983878e0478c.qmd'
v Quarto markdown file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198382f01e0.qmd'
Rendering Quarto document to HTML...
v HTML file created: 'D:\temp\2026_01_07_20_05_16_30115\RtmpCgwgEX\file198382f01e0.html'
Saving _problems/test-rtoqmd-620.R
Saving _problems/test-rtoqmd-621.R
Saving _problems/test-rtoqmd-622.R
Saving _problems/test-rtoqmd-623.R
Saving _problems/test-rtoqmd-624.R
Saving _problems/test-rtoqmd-625.R
Saving _problems/test-rtoqmd-626.R
Saving _problems/test-rtoqmd-627.R
Saving _problems/test-rtoqmd-628.R

-- Converting R Scripts to Quarto Markdown -------------------------------------
i Searching directory: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198387a8d162b'
i Recursive: TRUE
v Found 3 R scripts to convert

-- Converting files... --

v Quarto markdown file created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198387a8d162b/script1.qmd'
v Quarto markdown file created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198387a8d162b/script2.qmd'
v Quarto markdown file created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198387a8d162b/subdir/script3.qmd'

-- Conversion Summary --

v Successfully converted: 3 files

-- Creating Quarto Book --

v Created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198387a8d162b/index.qmd'
v Created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198387a8d162b/_quarto.yml'

-- Converting R Scripts to Quarto Markdown -------------------------------------
i Searching directory: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198383ea813b7'
i Recursive: FALSE
v Found 1 R script to convert

-- Converting files... --

v Quarto markdown file created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198383ea813b7/script1.qmd'

-- Conversion Summary --

v Successfully converted: 1 file

-- Creating Quarto Book --

v Created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198383ea813b7/index.qmd'
v Created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198383ea813b7/_quarto.yml'

-- Converting R Scripts to Quarto Markdown -------------------------------------
i Searching directory: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file19838781039cf'
i Recursive: TRUE
i Excluding 1 file matching pattern: test_script\.R$
v Found 1 R script to convert

-- Converting files... --

v Quarto markdown file created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file19838781039cf/script.qmd'

-- Conversion Summary --

v Successfully converted: 1 file

-- Creating Quarto Book --

v Created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file19838781039cf/index.qmd'
v Created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file19838781039cf/_quarto.yml'

-- Converting R Scripts to Quarto Markdown -------------------------------------
i Searching directory: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198387e3843af'
i Recursive: TRUE
! No R script files found in directory
x Directory does not exist: 'nonexistent_directory'

-- Converting R Scripts to Quarto Markdown -------------------------------------
i Searching directory: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198381694d42'
i Recursive: TRUE
v Found 1 R script to convert

-- Converting files... --

v Quarto markdown file created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198381694d42/analysis.qmd'

-- Conversion Summary --

v Successfully converted: 1 file

-- Creating Quarto Book --

v Created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198381694d42/index.qmd'
v Created: 'D:/temp/2026_01_07_20_05_16_30115/RtmpCgwgEX/file198381694d42/_quarto.yml'
[ FAIL 12 | WARN 0 | SKIP 0 | PASS 122 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-addins.R:64:3'): rtoqmd handles RStudio code sections correctly ──
Expected `any(grepl("^## Title 2$", output))` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-addins.R:65:3'): rtoqmd handles RStudio code sections correctly ──
Expected `any(grepl("^### Title 3$", output))` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-addins.R:66:3'): rtoqmd handles RStudio code sections correctly ──
Expected `any(grepl("^#### Title 4$", output))` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-rtoqmd.R:620:3'): rtoqmd removes trailing symbols from section titles ──
Expected `any(output == "## Section with hash")` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-rtoqmd.R:621:3'): rtoqmd removes trailing symbols from section titles ──
Expected `any(output == "## Section with many hashes")` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-rtoqmd.R:622:3'): rtoqmd removes trailing symbols from section titles ──
Expected `any(output == "### Section with equals")` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-rtoqmd.R:623:3'): rtoqmd removes trailing symbols from section titles ──
Expected `any(output == "### Section with many equals")` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-rtoqmd.R:624:3'): rtoqmd removes trailing symbols from section titles ──
Expected `any(output == "#### Section with dashes")` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-rtoqmd.R:625:3'): rtoqmd removes trailing symbols from section titles ──
Expected `any(output == "#### Section with many dashes")` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-rtoqmd.R:626:3'): rtoqmd removes trailing symbols from section titles ──
Expected `any(output == "## Mixed symbols with hash")` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-rtoqmd.R:627:3'): rtoqmd removes trailing symbols from section titles ──
Expected `any(output == "### Mixed symbols with equals")` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

── Failure ('test-rtoqmd.R:628:3'): rtoqmd removes trailing symbols from section titles ──
Expected `any(output == "#### Mixed symbols with dashes")` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 


[ FAIL 12 | WARN 0 | SKIP 0 | PASS 122 ]
Error:
! Test failures.
Execution halted