* using log directory ‘/srv/hornik/tmp/CRAN_pretest/quartify.Rcheck’ * using R Under development (unstable) (2026-01-07 r89285) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 21.1.8 (1) Debian flang version 21.1.8 (1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘quartify/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘quartify’ version ‘1.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Damien Dotta ’ New submission Possibly misspelled words in DESCRIPTION: qmd (8:73) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘quartify’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘CRAN_CHECKLIST_1.0.0.md’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/6s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [62s/53s] ERROR Running ‘testthat.R’ [61s/52s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(quartify) > > test_check("quartify") v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceee6bfb8.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceee6bfb8.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceee6bfb8.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceee6bfb8.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce4a8a2b87.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce4a8a2b87.html' Saving _problems/test-addins-64.R Saving _problems/test-addins-65.R Saving _problems/test-addins-66.R v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce135637f8.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce135637f8.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce55d8de4d.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce55d8de4d.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce233376d7.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce233376d7.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce43b7c2a0.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce43b7c2a0.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce5783aba.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce5783aba.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce1f8a297d.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce1f8a297d.html' x Input file does not exist: 'nonexistent.R' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce16456ba7.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce16456ba7.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce336ca5a.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce336ca5a.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce5fa584de.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce5fa584de.html' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce1f098114.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce7cb2a85b.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce7cb2a85b.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce1c19a13f.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce47338293.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce4afa9486.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce4a4980ed.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce1a9b038.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9cefe0129b.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce28e4eeb2.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce19c5b381.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce36d1c80a.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce6438035b.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce20e8d1e4.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceee1d7de.qmd' Rendering Quarto document to HTML... v HTML file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceee1d7de.html' Saving _problems/test-rtoqmd-620.R Saving _problems/test-rtoqmd-621.R Saving _problems/test-rtoqmd-622.R Saving _problems/test-rtoqmd-623.R Saving _problems/test-rtoqmd-624.R Saving _problems/test-rtoqmd-625.R Saving _problems/test-rtoqmd-626.R Saving _problems/test-rtoqmd-627.R Saving _problems/test-rtoqmd-628.R -- Converting R Scripts to Quarto Markdown ------------------------------------- i Searching directory: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceacb0914' i Recursive: TRUE v Found 3 R scripts to convert -- Converting files... -- v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceacb0914/script1.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceacb0914/script2.qmd' v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceacb0914/subdir/script3.qmd' -- Conversion Summary -- v Successfully converted: 3 files -- Creating Quarto Book -- v Created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceacb0914/index.qmd' v Created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ceacb0914/_quarto.yml' -- Converting R Scripts to Quarto Markdown ------------------------------------- i Searching directory: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce18d6e5cc' i Recursive: FALSE v Found 1 R script to convert -- Converting files... -- v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce18d6e5cc/script1.qmd' -- Conversion Summary -- v Successfully converted: 1 file -- Creating Quarto Book -- v Created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce18d6e5cc/index.qmd' v Created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce18d6e5cc/_quarto.yml' -- Converting R Scripts to Quarto Markdown ------------------------------------- i Searching directory: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce453a937a' i Recursive: TRUE i Excluding 1 file matching pattern: test_script\.R$ v Found 1 R script to convert -- Converting files... -- v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce453a937a/script.qmd' -- Conversion Summary -- v Successfully converted: 1 file -- Creating Quarto Book -- v Created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce453a937a/index.qmd' v Created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce453a937a/_quarto.yml' -- Converting R Scripts to Quarto Markdown ------------------------------------- i Searching directory: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce22ed47eb' i Recursive: TRUE ! No R script files found in directory x Directory does not exist: 'nonexistent_directory' -- Converting R Scripts to Quarto Markdown ------------------------------------- i Searching directory: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce1dd954f1' i Recursive: TRUE v Found 1 R script to convert -- Converting files... -- v Quarto markdown file created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce1dd954f1/analysis.qmd' -- Conversion Summary -- v Successfully converted: 1 file -- Creating Quarto Book -- v Created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce1dd954f1/index.qmd' v Created: '/tmp/RtmpnJByQd/working_dir/RtmpKy6upu/file1bd9ce1dd954f1/_quarto.yml' [ FAIL 12 | WARN 0 | SKIP 0 | PASS 122 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-addins.R:64:3'): rtoqmd handles RStudio code sections correctly ── Expected `any(grepl("^## Title 2$", output))` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-addins.R:65:3'): rtoqmd handles RStudio code sections correctly ── Expected `any(grepl("^### Title 3$", output))` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-addins.R:66:3'): rtoqmd handles RStudio code sections correctly ── Expected `any(grepl("^#### Title 4$", output))` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-rtoqmd.R:620:3'): rtoqmd removes trailing symbols from section titles ── Expected `any(output == "## Section with hash")` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-rtoqmd.R:621:3'): rtoqmd removes trailing symbols from section titles ── Expected `any(output == "## Section with many hashes")` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-rtoqmd.R:622:3'): rtoqmd removes trailing symbols from section titles ── Expected `any(output == "### Section with equals")` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-rtoqmd.R:623:3'): rtoqmd removes trailing symbols from section titles ── Expected `any(output == "### Section with many equals")` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-rtoqmd.R:624:3'): rtoqmd removes trailing symbols from section titles ── Expected `any(output == "#### Section with dashes")` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-rtoqmd.R:625:3'): rtoqmd removes trailing symbols from section titles ── Expected `any(output == "#### Section with many dashes")` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-rtoqmd.R:626:3'): rtoqmd removes trailing symbols from section titles ── Expected `any(output == "## Mixed symbols with hash")` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-rtoqmd.R:627:3'): rtoqmd removes trailing symbols from section titles ── Expected `any(output == "### Mixed symbols with equals")` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-rtoqmd.R:628:3'): rtoqmd removes trailing symbols from section titles ── Expected `any(output == "#### Mixed symbols with dashes")` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 12 | WARN 0 | SKIP 0 | PASS 122 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs