* installing *source* package 'qtlpoly' ...
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.2.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c MNR.cpp -o MNR.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
                 from MNR.cpp:6:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
  329 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
MNR.cpp: In function 'arma::vec varCols(const arma::mat&)':
MNR.cpp:111:19: warning: 'n' may be used uninitialized [-Wmaybe-uninitialized]
  111 |     out(j) = M2/(n-1);
      |                 ~~^~~
MNR.cpp:101:9: note: 'n' was declared here
  101 |     int n;
      |         ^
MNR.cpp: In function 'Rcpp::List MNR(const arma::mat&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const arma::vec&, int, double, double, const bool&, const bool&, const bool&, const bool&, const arma::vec&, const arma::vec&)':
MNR.cpp:753:36: warning: 'cycle2' may be used uninitialized [-Wmaybe-uninitialized]
  753 |   arma::mat monitor2 = monitor.cols(0, cycle2);
      |                        ~~~~~~~~~~~~^~~~~~~~~~~
MNR.cpp:375:14: note: 'cycle2' was declared here
  375 |   int cycle, cycle2;
      |              ^~~~~~
MNR.cpp:744:20: warning: 'llik' may be used uninitialized [-Wmaybe-uninitialized]
  744 |   double AIC = (-2 * llik) + (2 * Xm.n_cols);
      |                ~~~~^~~~~~~
MNR.cpp:376:16: note: 'llik' was declared here
  376 |   double ldet, llik, llik0, delta_llik, checkP, seconds; // to store likelihoods and determinants
      |                ^~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -s -static-libgcc -o qtlpoly.dll tmp.def MNR.o RcppExports.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-qtlpoly/00new/qtlpoly/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qtlpoly)