* using log directory 'd:/RCompile/CRANincoming/R-devel/qtlDesign.Rcheck' * using R version 4.4.0 beta (2024-04-12 r86412 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'qtlDesign/DESCRIPTION' ... OK * this is package 'qtlDesign' version '0.953' * checking CRAN incoming feasibility ... NOTE Maintainer: 'Saunak Sen ' New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: QTL (2:18, 6:24) al (11:10) et (11:7) genotyping (8:3) phenotyping (8:26) CRAN repository db overrides: X-CRAN-Comment: Archived on 2022-06-20 as check problems were not corrected despite reminders. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'qtlDesign' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Author field differs from that derived from Authors@R Author: 'Saunak Sen, Jaya Satagopan, Karl Broman, and Gary Churchill' Authors@R: 'Saunak Sen [aut, cre], Jaya Satagopan [ctb], Karl Broman [ctb], Gary Churchill [ctb], Brian Yandell [ctb]' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... OK * DONE Status: 2 NOTEs