* installing *source* package ‘qtl2’ ... ** this is package ‘qtl2’ version ‘0.38’ ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c arrange_genes.cpp -o arrange_genes.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c bayes_int.cpp -o bayes_int.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c binreg.cpp -o binreg.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c binreg_eigen.cpp -o binreg_eigen.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c binreg_weighted.cpp -o binreg_weighted.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c binreg_weighted_eigen.cpp -o binreg_weighted_eigen.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c brent_fmin.cpp -o brent_fmin.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c calc_kinship.cpp -o calc_kinship.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c check_cross.cpp -o check_cross.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c chisq_colpairs.cpp -o chisq_colpairs.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c clean_genoprob.cpp -o clean_genoprob.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c compare_geno.cpp -o compare_geno.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c count_xo.cpp -o count_xo.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross.cpp -o cross.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_ail.cpp -o cross_ail.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_ail3.cpp -o cross_ail3.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_ail3pk.cpp -o cross_ail3pk.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_ailpk.cpp -o cross_ailpk.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_bc.cpp -o cross_bc.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_dh6.cpp -o cross_dh6.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_do.cpp -o cross_do.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_do_util.cpp -o cross_do_util.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_dof1.cpp -o cross_dof1.o cross_dof1.cpp: In member function ‘virtual const bool DOF1::check_geno(int, bool, bool, bool, const Rcpp::IntegerVector&)’: cross_dof1.cpp:23:15: warning: unused variable ‘n_alleles’ [-Wunused-variable] 23 | const int n_alleles = 8; | ^~~~~~~~~ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_dopk.cpp -o cross_dopk.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_f2.cpp -o cross_f2.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_f2pk.cpp -o cross_f2pk.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_genail.cpp -o cross_genail.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_genril.cpp -o cross_genril.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_haploid.cpp -o cross_haploid.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_hs.cpp -o cross_hs.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_hsf1.cpp -o cross_hsf1.o cross_hsf1.cpp: In member function ‘virtual const bool HSF1::check_geno(int, bool, bool, bool, const Rcpp::IntegerVector&)’: cross_hsf1.cpp:23:15: warning: unused variable ‘n_alleles’ [-Wunused-variable] 23 | const int n_alleles = 8; | ^~~~~~~~~ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_hspk.cpp -o cross_hspk.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_magic19.cpp -o cross_magic19.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_riself.cpp -o cross_riself.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_riself16.cpp -o cross_riself16.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_riself4.cpp -o cross_riself4.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_riself8.cpp -o cross_riself8.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_risib.cpp -o cross_risib.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_risib4.cpp -o cross_risib4.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_risib8.cpp -o cross_risib8.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cross_util.cpp -o cross_util.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c debug_util.cpp -o debug_util.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c find_dup_markers.cpp -o find_dup_markers.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c find_ibd_segments.cpp -o find_ibd_segments.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c find_peaks.cpp -o find_peaks.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c fit1_binary.cpp -o fit1_binary.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c fit1_hk.cpp -o fit1_hk.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c fit1_pg.cpp -o fit1_pg.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c geno_names.cpp -o geno_names.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c genoprob_to_alleleprob.cpp -o genoprob_to_alleleprob.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c get_x_covar.cpp -o get_x_covar.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c guess_phase.cpp -o guess_phase.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_calcerrorlod.cpp -o hmm_calcerrorlod.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_calcgenoprob.cpp -o hmm_calcgenoprob.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_calcgenoprob2.cpp -o hmm_calcgenoprob2.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_estmap.cpp -o hmm_estmap.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_estmap2.cpp -o hmm_estmap2.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_forwback.cpp -o hmm_forwback.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_forwback2.cpp -o hmm_forwback2.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_simgeno.cpp -o hmm_simgeno.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_simgeno2.cpp -o hmm_simgeno2.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_util.cpp -o hmm_util.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_viterbi.cpp -o hmm_viterbi.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hmm_viterbi2.cpp -o hmm_viterbi2.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c interp_genoprob.cpp -o interp_genoprob.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c interpolate_maps.cpp -o interpolate_maps.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c linreg.cpp -o linreg.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c linreg_eigen.cpp -o linreg_eigen.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c lmm.cpp -o lmm.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c locate_xo.cpp -o locate_xo.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c lod_int.cpp -o lod_int.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c matrix.cpp -o matrix.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c maxmarg.cpp -o maxmarg.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c predict_snpgeno.cpp -o predict_snpgeno.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c r_message.cpp -o r_message.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c random.cpp -o random.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c reduce_markers.cpp -o reduce_markers.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c scan1_binary.cpp -o scan1_binary.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c scan1_hk.cpp -o scan1_hk.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c scan1_pg.cpp -o scan1_pg.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c scan1blup.cpp -o scan1blup.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c scan1coef_binary.cpp -o scan1coef_binary.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c scan1coef_hk.cpp -o scan1coef_hk.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c scan1coef_pg.cpp -o scan1coef_pg.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c snpprobs.cpp -o snpprobs.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test_hmm.cpp -o test_hmm.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o qtl2.so RcppExports.o arrange_genes.o bayes_int.o binreg.o binreg_eigen.o binreg_weighted.o binreg_weighted_eigen.o brent_fmin.o calc_kinship.o check_cross.o chisq_colpairs.o clean_genoprob.o compare_geno.o count_xo.o cross.o cross_ail.o cross_ail3.o cross_ail3pk.o cross_ailpk.o cross_bc.o cross_dh6.o cross_do.o cross_do_util.o cross_dof1.o cross_dopk.o cross_f2.o cross_f2pk.o cross_genail.o cross_genril.o cross_haploid.o cross_hs.o cross_hsf1.o cross_hspk.o cross_magic19.o cross_riself.o cross_riself16.o cross_riself4.o cross_riself8.o cross_risib.o cross_risib4.o cross_risib8.o cross_util.o debug_util.o find_dup_markers.o find_ibd_segments.o find_peaks.o fit1_binary.o fit1_hk.o fit1_pg.o geno_names.o genoprob_to_alleleprob.o get_x_covar.o guess_phase.o hmm_calcerrorlod.o hmm_calcgenoprob.o hmm_calcgenoprob2.o hmm_estmap.o hmm_estmap2.o hmm_forwback.o hmm_forwback2.o hmm_simgeno.o hmm_simgeno2.o hmm_util.o hmm_viterbi.o hmm_viterbi2.o interp_genoprob.o interpolate_maps.o linreg.o linreg_eigen.o lmm.o locate_xo.o lod_int.o matrix.o maxmarg.o predict_snpgeno.o r_message.o random.o reduce_markers.o scan1_binary.o scan1_hk.o scan1_pg.o scan1blup.o scan1coef_binary.o scan1coef_hk.o scan1coef_pg.o snpprobs.o test_hmm.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR installing to /home/hornik/tmp/CRAN_special_gcc-san/qtl2.Rcheck/00LOCK-qtl2/00new/qtl2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qtl2)