downloading reverse dependencies ... downloading anabel_3.0.1.tar.gz ... ok downloading AssetCorr_1.0.4.tar.gz ... ok downloading CLimd_0.1.0.tar.gz ... ok downloading colordistance_1.1.2.tar.gz ... ok downloading ddiv_0.1.1.tar.gz ... ok downloading dogesr_0.5.0.tar.gz ... ok downloading fssemR_0.1.8.tar.gz ... ok downloading GWRLASSO_0.1.0.tar.gz ... ok downloading JustifyAlpha_0.1.1.tar.gz ... ok downloading LoBrA_1.0.tar.gz ... ok downloading MARSGWR_0.1.0.tar.gz ... ok downloading MiRNAQCD_1.1.3.tar.gz ... ok downloading pdftools_3.4.0.tar.gz ... ok downloading psdr_1.0.1.tar.gz ... ok downloading robin_1.1.2.tar.gz ... ok downloading RTIGER_2.1.0.tar.gz ... ok downloading SherlockHolmes_1.0.1.tar.gz ... ok downloading SmartEDA_0.3.10.tar.gz ... ok downloading SpatGRID_0.1.0.tar.gz ... ok downloading SpatialPOP_0.1.0.tar.gz ... ok downloading SpPOP_0.1.0.tar.gz ... ok downloading statcanR_0.2.6.tar.gz ... ok downloading StepGWR_0.1.0.tar.gz ... ok downloading xmrr_1.1.1.tar.gz ... ok downloading amerifluxr_1.0.0.tar.gz ... ok downloading aphid_1.3.5.tar.gz ... ok downloading bpnreg_2.0.3.tar.gz ... ok downloading caracas_2.1.1.tar.gz ... ok downloading communication_0.1.tar.gz ... ok downloading corrmeta_1.0.0.tar.gz ... ok downloading dupNodes_0.2.0.tar.gz ... ok downloading ExposR_1.1.tar.gz ... ok downloading FixedPoint_0.6.3.tar.gz ... ok downloading fractalRegression_1.2.tar.gz ... ok downloading ftExtra_0.6.2.tar.gz ... ok downloading gkgraphR_1.0.2.tar.gz ... ok downloading hopit_0.11.6.tar.gz ... ok downloading HurreconR_1.1.tar.gz ... ok downloading HyRiM_2.0.2.tar.gz ... ok downloading leiden_0.4.3.1.tar.gz ... ok downloading modeltime_1.2.8.tar.gz ... ok downloading modeltime.ensemble_1.0.3.tar.gz ... ok downloading multiclassPairs_0.4.3.tar.gz ... ok downloading multirich_2.1.3.tar.gz ... ok downloading oRus_1.0.0.tar.gz ... ok downloading Pandora_24.2.0.tar.gz ... ok downloading pathwayTMB_0.1.3.tar.gz ... ok downloading PressPurt_1.0.2.tar.gz ... ok downloading profiplots_0.2.3.tar.gz ... ok downloading quickcode_0.7.tar.gz ... ok downloading r2country_2.0.2.3.1.tar.gz ... ok downloading r2dictionary_0.2.tar.gz ... ok downloading r2shortcode_0.1.tar.gz ... ok downloading r2symbols_1.4.tar.gz ... ok downloading RRphylo_2.8.0.tar.gz ... ok downloading scpoisson_0.0.1.tar.gz ... ok downloading SCpubr_2.0.2.tar.gz ... ok downloading shapper_0.1.3.tar.gz ... ok downloading shinyStorePlus_1.1.tar.gz ... ok downloading synthesis_1.2.4.tar.gz ... ok downloading tidyHeatmap_1.8.1.tar.gz ... ok downloading treefit_1.0.2.tar.gz ... ok downloading VedicDateTime_0.1.9.tar.gz ... ok downloading VSOLassoBag_0.99.1.tar.gz ... ok downloading xmpdf_0.1.4.tar.gz ... ok installing dependencies ‘AUCell’, ‘Boruta’, ‘compare’, ‘crqa’, ‘datetimeoffset’, ‘ddpcr’, ‘decoupleR’, ‘dogesr’, ‘dpseg’, ‘dunn.test’, ‘emdist’, ‘evolqg’, ‘exiftoolr’, ‘fdatest’, ‘glmpca’, ‘graphsim’, ‘grImport2’, ‘Gviz’, ‘infercnv’, ‘inflection’, ‘JuliaCall’, ‘kmer’, ‘leukemiasEset’, ‘maftools’, ‘MFDFA’, ‘modeltime’, ‘modeltime.resample’, ‘multinet’, ‘multiplex’, ‘mvMORPH’, ‘mvQuad’, ‘Nebulosa’, ‘NPRED’, ‘plot.matrix’, ‘POT’, ‘qpdf’, ‘quickcode’, ‘Rphylopars’, ‘rsample’, ‘schumaker’, ‘smatr’, ‘Superpower’, ‘swephR’, ‘switchBox’, ‘tableHTML’, ‘TailRank’, ‘tesseract’, ‘textBoxPlacement’, ‘thief’, ‘trelliscopejs’, ‘TSrepr’, ‘UCell’, ‘useful’, ‘WASP’, ‘webp’, ‘wrassp’ also installing the dependencies ‘AnnotationFilter’, ‘ProtGenerics’, ‘VariantAnnotation’, ‘findpython’, ‘ensembldb’, ‘biovizBase’, ‘phylogram’, ‘tseriesChaos’, ‘hts’, ‘autocogs’, ‘phyclust’, ‘HiddenMarkov’, ‘argparse’ begin installing package ‘AnnotationFilter’ begin installing package ‘ProtGenerics’ begin installing package ‘VariantAnnotation’ begin installing package ‘findpython’ begin installing package ‘phylogram’ begin installing package ‘tseriesChaos’ begin installing package ‘hts’ begin installing package ‘autocogs’ begin installing package ‘phyclust’ begin installing package ‘HiddenMarkov’ begin installing package ‘mvQuad’ begin installing package ‘emdist’ begin installing package ‘Superpower’ begin installing package ‘webp’ begin installing package ‘qpdf’ begin installing package ‘fdatest’ begin installing package ‘TailRank’ begin installing package ‘JuliaCall’ begin installing package ‘dpseg’ begin installing package ‘tableHTML’ begin installing package ‘textBoxPlacement’ begin installing package ‘plot.matrix’ begin installing package ‘useful’ begin installing package ‘wrassp’ begin installing package ‘schumaker’ begin installing package ‘MFDFA’ begin installing package ‘compare’ begin installing package ‘grImport2’ * installing *source* package ‘findpython’ ... ** package ‘findpython’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (findpython) begin installing package ‘graphsim’ * installing *source* package ‘MFDFA’ ... ** package ‘MFDFA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MFDFA) begin installing package ‘multiplex’ * installing *source* package ‘textBoxPlacement’ ... ** package ‘textBoxPlacement’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (textBoxPlacement) begin installing package ‘multinet’ * installing *source* package ‘schumaker’ ... ** package ‘schumaker’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (schumaker) begin installing package ‘TSrepr’ * installing *source* package ‘webp’ ... ** package ‘webp’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/webp Using PKG_LIBS=-lwebp ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpibdb5W/R.INSTALL101e8228719f2/webp/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/webp -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c webp.c -o webp.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o webp.so register.o webp.o -lwebp -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpibdb5W/R.INSTALL101e8228719f2/webp/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-webp/00new/webp/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (webp) begin installing package ‘rsample’ * installing *source* package ‘mvQuad’ ... ** package ‘mvQuad’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvQuad) begin installing package ‘Boruta’ * installing *source* package ‘emdist’ ... ** package ‘emdist’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQ202VY/R.INSTALL101d93acce1e/emdist/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dummy.c -o dummy.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c emd-r.c -o emd-r.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c emd-rubner.c -o emd-rubner.o emd-rubner.c: In function ‘emd_rubner’: emd-rubner.c:810:20: warning: ‘minI’ is used uninitialized [-Wuninitialized] 810 | int i, j, found, minI, minJ; | ^~~~ emd-rubner.c:810:26: warning: ‘minJ’ is used uninitialized [-Wuninitialized] 810 | int i, j, found, minI, minJ; | ^~~~ emd-rubner.c:602:13: warning: ‘minI’ may be used uninitialized [-Wmaybe-uninitialized] 602 | int i, j, minI, minJ; | ^~~~ emd-rubner.c:602:19: warning: ‘minJ’ may be used uninitialized [-Wmaybe-uninitialized] 602 | int i, j, minI, minJ; | ^~~~ In function ‘newSol’, inlined from ‘emd_rubner’ at emd-rubner.c:224:4: emd-rubner.c:690:8: warning: ‘LeaveX’ may be used uninitialized [-Wmaybe-uninitialized] 690 | if (_RowsX[i] == LeaveX) | ^ emd-rubner.c: In function ‘emd_rubner’: emd-rubner.c:645:21: note: ‘LeaveX’ was declared here 645 | node2_t *CurX, *LeaveX; | ^~~~~~ emd-rubner.c:254:23: warning: ‘FlowP’ may be used uninitialized [-Wmaybe-uninitialized] 254 | FlowP->from = XP->i; | ~~~~~~~~~~~~^~~~~~~ emd-rubner.c:197:11: note: ‘FlowP’ was declared here 197 | flow_t *FlowP; | ^~~~~ gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o emdist.so dummy.o emd-r.o emd-rubner.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQ202VY/R.INSTALL101d93acce1e/emdist/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-emdist/00new/emdist/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emdist) begin installing package ‘dunn.test’ * installing *source* package ‘phylogram’ ... ** package ‘phylogram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phylogram) begin installing package ‘switchBox’ * installing *source* package ‘plot.matrix’ ... ** package ‘plot.matrix’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plot.matrix) begin installing package ‘leukemiasEset’ * installing *source* package ‘compare’ ... ** package ‘compare’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (compare) begin installing package ‘maftools’ * installing *source* package ‘tseriesChaos’ ... ** package ‘tseriesChaos’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVLbrC1/R.INSTALL101ad29131286/tseriesChaos/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C2.c -o C2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c d2.c -o d2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c false.nearest.c -o false.nearest.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c find_knearests.c -o find_knearests.o find_knearests.c: In function ‘find_knearests’: find_knearests.c:21:9: warning: variable ‘md’ set but not used [-Wunused-but-set-variable] 21 | int i,j,md; | ^~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c follow_points.c -o follow_points.o follow_points.c: In function ‘follow_points’: follow_points.c:22:30: warning: variable ‘length’ set but not used [-Wunused-but-set-variable] 22 | int m,d, s, nref, totref, k, length, *ref; | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mutual.c -o mutual.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c search.c -o search.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stplot.c -o stplot.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o tseriesChaos.so C2.o d2.o false.nearest.o find_knearests.o follow_points.o misc.o mutual.o search.o stplot.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVLbrC1/R.INSTALL101ad29131286/tseriesChaos/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-tseriesChaos/00new/tseriesChaos/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tseriesChaos) begin installing package ‘quickcode’ * installing *source* package ‘ProtGenerics’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘smooth’ in package ‘ProtGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ProtGenerics) begin installing package ‘smatr’ * installing *source* package ‘TailRank’ ... ** package ‘TailRank’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TailRank) begin installing package ‘ddpcr’ * installing *source* package ‘tableHTML’ ... ** package ‘tableHTML’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tableHTML) begin installing package ‘mvMORPH’ * installing *source* package ‘autocogs’ ... ** package ‘autocogs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (autocogs) begin installing package ‘inflection’ * installing *source* package ‘grImport2’ ... ** package ‘grImport2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (grImport2) begin installing package ‘evolqg’ * installing *source* package ‘Boruta’ ... ** package ‘Boruta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Boruta) begin installing package ‘Rphylopars’ * installing *source* package ‘HiddenMarkov’ ... ** package ‘HiddenMarkov’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRoSIWb/R.INSTALL101dd18dbf09/HiddenMarkov/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HiddenMarkov_init.c -o HiddenMarkov_init.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dthmm.f -o dthmm.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c extract.f -o extract.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mmpp.f -o mmpp.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c multiply.f -o multiply.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o HiddenMarkov.so HiddenMarkov_init.o dthmm.o extract.o mmpp.o multiply.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRoSIWb/R.INSTALL101dd18dbf09/HiddenMarkov/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-HiddenMarkov/00new/HiddenMarkov/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiddenMarkov) begin installing package ‘glmpca’ * installing *source* package ‘dunn.test’ ... ** package ‘dunn.test’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dunn.test) begin installing package ‘AUCell’ * installing *source* package ‘useful’ ... ** package ‘useful’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (useful) begin installing package ‘decoupleR’ * installing *source* package ‘leukemiasEset’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leukemiasEset) begin installing package ‘Nebulosa’ * installing *source* package ‘quickcode’ ... ** package ‘quickcode’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quickcode) begin installing package ‘UCell’ * installing *source* package ‘inflection’ ... ** package ‘inflection’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inflection) begin installing package ‘WASP’ * installing *source* package ‘smatr’ ... ** package ‘smatr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smatr) begin installing package ‘NPRED’ * installing *source* package ‘glmpca’ ... ** package ‘glmpca’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmpca) begin installing package ‘swephR’ * installing *source* package ‘switchBox’ ... ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpx6TOY8/R.INSTALL107e1a0e24fd/switchBox/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalculateSignedScoreCore.cc -o CalculateSignedScoreCore.o CalculateSignedScoreCore.cc: In function ‘void CalculateSignedScoreCore(int*, int*, double*, int*, double*, int*, double*, double*, double*, double*, double*, double*, double*)’: CalculateSignedScoreCore.cc:36:26: warning: variable ‘pairsNo’ set but not used [-Wunused-but-set-variable] 36 | int i,j,l,countplace,pairsNo; | ^~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalculateSignedScoreCoreTieHandler.cc -o CalculateSignedScoreCoreTieHandler.o CalculateSignedScoreCoreTieHandler.cc: In function ‘void CalculateSignedScoreCoreTieHandler(int*, int*, double*, int*, double*, int*, double*, double*, double*, double*)’: CalculateSignedScoreCoreTieHandler.cc:49:12: warning: unused variable ‘score1’ [-Wunused-variable] 49 | double score1, score2, type; | ^~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalculateSignedScoreRestrictedPairsCore.cc -o CalculateSignedScoreRestrictedPairsCore.o CalculateSignedScoreRestrictedPairsCore.cc: In function ‘void CalculateSignedScoreRestrictedPairsCore(int*, int*, double*, int*, double*, int*, int*, int*, int*, double*, double*, double*)’: CalculateSignedScoreRestrictedPairsCore.cc:22:25: warning: variable ‘countplace’ set but not used [-Wunused-but-set-variable] 22 | int i,l,countplace,pairsNo; | ^~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalculateSignedScoreRestrictedPairsCoreTieHandler.cc -o CalculateSignedScoreRestrictedPairsCoreTieHandler.o CalculateSignedScoreRestrictedPairsCoreTieHandler.cc: In function ‘void CalculateSignedScoreRestrictedPairsCoreTieHandler(int*, int*, double*, int*, double*, int*, int*, int*, int*, double*, double*, double*, double*)’: CalculateSignedScoreRestrictedPairsCoreTieHandler.cc:25:25: warning: unused variable ‘countplace’ [-Wunused-variable] 25 | int i,l,countplace,pairsNo; | ^~~~~~~~~~ CalculateSignedScoreRestrictedPairsCoreTieHandler.cc:35:24: warning: unused variable ‘score1’ [-Wunused-variable] 35 | double score1, score2, type; | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rinit.c -o rinit.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vect2compC.cc -o vect2compC.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o switchBox.so CalculateSignedScoreCore.o CalculateSignedScoreCoreTieHandler.o CalculateSignedScoreRestrictedPairsCore.o CalculateSignedScoreRestrictedPairsCoreTieHandler.o rinit.o vect2compC.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx6TOY8/R.INSTALL107e1a0e24fd/switchBox/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-switchBox/00new/switchBox/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (switchBox) begin installing package ‘POT’ * installing *source* package ‘graphsim’ ... ** package ‘graphsim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graphsim) begin installing package ‘datetimeoffset’ * installing *source* package ‘ddpcr’ ... ** package ‘ddpcr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ddpcr) begin installing package ‘exiftoolr’ * installing *source* package ‘fdatest’ ... ** package ‘fdatest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fdatest) begin installing package ‘argparse’ * installing *source* package ‘rsample’ ... ** package ‘rsample’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rsample) begin installing package ‘kmer’ * installing *source* package ‘NPRED’ ... ** package ‘NPRED’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphVGusE/R.INSTALL10c6469e1fd0b/NPRED/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c NPRED_init.c -o NPRED_init.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c pic2wt.f -o pic2wt.o f951: Warning: Nonconforming tab character in column 1 of line 1 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 5 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 6 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 7 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 8 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 10 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 13 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 14 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 20 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 21 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 22 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 23 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 24 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 27 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 28 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 29 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 30 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 31 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 35 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 36 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 37 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 38 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 39 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 40 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 41 [-Wtabs] f951: Warning: Nonconforming tab character in column 2 of line 42 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 43 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 44 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 46 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 47 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 49 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 50 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 51 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 52 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 53 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 55 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 56 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 58 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 59 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 60 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 61 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 62 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 63 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 64 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 65 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 66 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 67 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 68 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 70 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 71 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 73 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 74 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 75 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 76 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 79 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 80 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 81 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 83 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 84 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 85 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 86 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 87 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 88 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 90 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 91 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 92 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 93 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 95 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 96 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 98 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 99 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 101 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 104 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 105 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 106 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 109 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 110 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 111 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 112 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 113 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 114 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 115 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 116 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 118 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 119 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 120 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 121 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 123 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 125 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 127 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 128 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 130 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 131 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 132 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 133 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 134 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 135 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 136 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 137 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 140 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 146 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 147 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 148 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 149 [-Wtabs] f951: Warning: Nonconforming tab character in column 2 of line 150 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 151 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 152 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 154 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 155 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 156 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 157 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 158 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 159 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 161 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 162 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 163 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 164 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 165 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 166 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 168 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 169 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 170 [-Wtabs] f951: Warning: Nonconforming tab character in column 2 of line 171 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 173 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 174 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 175 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 176 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 177 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 183 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 186 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 187 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 191 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 195 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 196 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 198 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 201 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 202 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 203 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 205 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 206 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 207 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 208 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 209 [-Wtabs] f951: Warning: Nonconforming tab character in column 2 of line 211 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 213 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 214 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 215 [-Wtabs] f951: Warning: Nonconforming tab character in column 4 of line 216 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 219 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 221 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 222 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 225 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 228 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 229 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 230 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 232 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 233 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 234 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 235 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 237 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 239 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 241 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 242 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 243 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 244 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 245 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 246 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 247 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 248 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 249 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 250 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 251 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 252 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 254 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 255 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 259 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 260 [-Wtabs] pic2wt.f:133:72: 133 | 20 SUM=SUM+(X(J)-AV1)*(Y(J)-AV2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) pic2wt.f:183:22: 183 | 1 iseed,nvarmax,nobsmax) | 1 Warning: Unused dummy argument ‘iseed’ at (1) [-Wunused-dummy-argument] gfortran-13 -fpic -g -O2 -Wall -mtune=native -c pmi.f -o pmi.o f951: Warning: Nonconforming tab character in column 1 of line 14 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 16 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 17 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 18 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 20 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 21 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 22 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 23 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 24 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 25 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 28 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 29 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 30 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 31 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 37 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 39 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 40 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 41 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 42 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 43 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 44 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 45 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 46 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 47 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 48 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 49 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 50 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 51 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 53 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 54 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 55 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 57 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 58 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 59 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 60 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 61 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 62 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 63 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 64 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 65 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 66 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 67 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 68 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 70 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 71 [-Wtabs] f951: Warning: Nonconforming tab character in column 4 of line 74 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 76 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 77 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 78 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 79 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 80 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 81 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 82 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 83 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 84 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 85 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 87 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 88 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs] f951: Warning: Nonconforming tab character in column 5 of line 92 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 94 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 95 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 96 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 97 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 98 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 99 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 101 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 102 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 104 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 105 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 107 [-Wtabs] f951: Warning: Nonconforming tab character in column 4 of line 109 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 110 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 117 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 123 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 124 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 179 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 181 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 187 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 192 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 193 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 196 [-Wtabs] f951: Warning: Nonconforming tab character in column 4 of line 197 [-Wtabs] f951: Warning: Nonconforming tab character in column 4 of line 203 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 210 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 211 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 212 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 213 [-Wtabs] f951: Warning: Nonconforming tab character in column 4 of line 214 [-Wtabs] f951: Warning: Nonconforming tab character in column 4 of line 215 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 222 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 223 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 224 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 226 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 227 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 228 [-Wtabs] f951: Warning: Nonconforming tab character in column 4 of line 229 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 230 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 231 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 232 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 233 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 234 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 235 [-Wtabs] f951: Warning: Nonconforming tab character in column 4 of line 236 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 238 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 250 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 252 [-Wtabs] f951: Warning: Nonconforming tab character in column 2 of line 263 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 276 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 277 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 282 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 290 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 295 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 297 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 298 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 299 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 300 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 301 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 302 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 304 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 305 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 306 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 307 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 311 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 312 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 313 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 314 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 318 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 319 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 320 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 321 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 322 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 324 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 325 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 326 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 327 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 334 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 344 [-Wtabs] f951: Warning: Nonconforming tab character in column 2 of line 345 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 351 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 353 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 354 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 355 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 356 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 358 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 360 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 361 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 362 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 363 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 364 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 365 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 366 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 367 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 369 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 370 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 372 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 373 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 374 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 375 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 376 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 377 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 380 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 381 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 382 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 383 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 384 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 385 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 386 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 387 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 388 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 389 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 391 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 392 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 399 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 400 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 409 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 410 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 411 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 412 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 413 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 432 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 713 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 715 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 716 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 717 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 718 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 719 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 725 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 726 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 727 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 728 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 729 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 730 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 731 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 732 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 733 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 739 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 740 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 741 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 742 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 743 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 744 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 745 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 746 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 747 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 748 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 749 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 750 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 751 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 753 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 754 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 755 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 756 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 757 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 758 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 759 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 760 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 761 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 762 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 764 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 767 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 768 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 769 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 770 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 771 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 772 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 773 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 774 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 775 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 776 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 777 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 778 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 779 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 780 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 781 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 782 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 783 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 784 [-Wtabs] pmi.f:229:18: 229 | 290 continue | 1 Warning: Nonconforming tab character at (1) [-Wtabs] pmi.f:413:13: 413 | endif | 1 Warning: Nonconforming tab character at (1) [-Wtabs] pmi.f:447:72: 447 | 110 C(i,j)=0.d0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) pmi.f:70:72: 70 | nvv=ii | ^ Warning: ‘ii’ may be used uninitialized [-Wmaybe-uninitialized] pmi.f:41:8: 41 | ii=1 | ^ note: ‘ii’ was declared here gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o NPRED.so NPRED_init.o pic2wt.o pmi.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphVGusE/R.INSTALL10c6469e1fd0b/NPRED/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-NPRED/00new/NPRED/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NPRED) begin installing package ‘crqa’ * installing *source* package ‘WASP’ ... ** package ‘WASP’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WASP) begin installing package ‘trelliscopejs’ * installing *source* package ‘exiftoolr’ ... ** package ‘exiftoolr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (exiftoolr) begin installing package ‘modeltime’ * installing *source* package ‘AnnotationFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AnnotationFilter) begin installing package ‘ensembldb’ * installing *source* package ‘argparse’ ... ** package ‘argparse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (argparse) * installing *source* package ‘datetimeoffset’ ... ** package ‘datetimeoffset’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (datetimeoffset) * installing *source* package ‘decoupleR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (decoupleR) * installing *source* package ‘Superpower’ ... ** package ‘Superpower’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Superpower) * installing *source* package ‘POT’ ... ** package ‘POT’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyhtnR5/R.INSTALL10dc26295685c/POT/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c POT.c -o POT.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bvgpdlik.c -o bvgpdlik.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ccop.c -o ccop.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cgpdlik.c -o cgpdlik.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c clust.c -o clust.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mcgpdlik.c -o mcgpdlik.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simmc.c -o simmc.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ts2tsd.c -o ts2tsd.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o POT.so POT.o bvgpdlik.o ccop.o cgpdlik.o clust.o init.o mcgpdlik.o simmc.o ts2tsd.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyhtnR5/R.INSTALL10dc26295685c/POT/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-POT/00new/POT/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (POT) * installing *source* package ‘JuliaCall’ ... ** package ‘JuliaCall’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeSiNKx/R.INSTALL102044d6d3dc5/JuliaCall/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c JuliaCall.cpp -o JuliaCall.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libjulia.cpp -o libjulia.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o JuliaCall.so JuliaCall.o RcppExports.o libjulia.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeSiNKx/R.INSTALL102044d6d3dc5/JuliaCall/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-JuliaCall/00new/JuliaCall/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JuliaCall) * installing *source* package ‘wrassp’ ... ** package ‘wrassp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUlFgc2/R.INSTALL1020f72db7242/wrassp/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/acf.c -o assp/acf.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/dataobj.c -o assp/dataobj.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/freqconv.c -o assp/freqconv.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/mhs.c -o assp/mhs.o assp/mhs.c: In function ‘computeMHS’: assp/mhs.c:448:12: warning: variable ‘FILE_IN’ set but not used [-Wunused-but-set-variable] 448 | int FILE_IN, FILE_OUT, CREATED, VOICED; | ^~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/smp2dur.c -o assp/smp2dur.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/asspana.c -o assp/asspana.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/diff.c -o assp/diff.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/headers.c -o assp/headers.o assp/headers.c: In function ‘getAIFhdr’: assp/headers.c:882:12: warning: variable ‘blockSize’ set but not used [-Wunused-but-set-variable] 882 | uint32_t blockSize; | ^~~~~~~~~ assp/headers.c: In function ‘getCSLhdr’: assp/headers.c:1231:12: warning: variable ‘peakMag’ set but not used [-Wunused-but-set-variable] 1231 | int16_t peakMag; | ^~~~~~~ assp/headers.c: In function ‘getWAVhdr’: assp/headers.c:1828:22: warning: variable ‘lspPosMask’ set but not used [-Wunused-but-set-variable] 1828 | uint32_t byteRate, lspPosMask; | ^~~~~~~~~~ assp/headers.c:1828:12: warning: variable ‘byteRate’ set but not used [-Wunused-but-set-variable] 1828 | uint32_t byteRate, lspPosMask; | ^~~~~~~~ assp/headers.c: In function ‘putSSFFhdr’: assp/headers.c:2824:7: warning: unused variable ‘prev_header_length’ [-Wunused-variable] 2824 | int prev_header_length = strlen(header); | ^~~~~~~~~~~~~~~~~~ assp/headers.c: At top level: assp/headers.c:875:11: warning: ‘getAIFhdr’ defined but not used [-Wunused-function] 875 | LOCAL int getAIFhdr(DOBJ *dop) | ^~~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/miscstring.c -o assp/miscstring.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/spectra.c -o assp/spectra.o assp/spectra.c: In function ‘freeSPECT_GD’: assp/spectra.c:734:13: warning: unused variable ‘gd’ [-Wunused-variable] 734 | SPECT_GD *gd; | ^~ assp/spectra.c: In function ‘getCepstrum’: assp/spectra.c:932:23: warning: unused variable ‘M’ [-Wunused-variable] 932 | register long n, N, M, L; | ^ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/asspfio.c -o assp/asspfio.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/dsputils.c -o assp/dsputils.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/isgerman.c -o assp/isgerman.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/myrand.c -o assp/myrand.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/statistics.c -o assp/statistics.o assp/statistics.c: In function ‘statPrintHist’: assp/statistics.c:478:10: warning: unused variable ‘centre’ [-Wunused-variable] 478 | double centre; | ^~~~~~ assp/statistics.c:477:10: warning: unused variable ‘i’ [-Wunused-variable] 477 | size_t i; | ^ assp/statistics.c:476:14: warning: unused variable ‘nd1’ [-Wunused-variable] 476 | int nd, nd1; | ^~~ assp/statistics.c:476:10: warning: unused variable ‘nd’ [-Wunused-variable] 476 | int nd, nd1; | ^~ assp/statistics.c:475:10: warning: unused variable ‘format’ [-Wunused-variable] 475 | char format[32]; | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/asspmess.c -o assp/asspmess.o assp/asspmess.c: In function ‘prtAsspMsg’: assp/asspmess.c:169:9: warning: unused variable ‘funcVal’ [-Wunused-variable] 169 | int funcVal; | ^~~~~~~ assp/asspmess.c:168:20: warning: unused variable ‘indent’ [-Wunused-variable] 168 | char *msg, *bug, indent[16]; | ^~~~~~ assp/asspmess.c:168:15: warning: unused variable ‘bug’ [-Wunused-variable] 168 | char *msg, *bug, indent[16]; | ^~~ assp/asspmess.c:168:9: warning: unused variable ‘msg’ [-Wunused-variable] 168 | char *msg, *bug, indent[16]; | ^~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/fft.c -o assp/fft.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/ksv.c -o assp/ksv.o assp/ksv.c: In function ‘computeKSV’: assp/ksv.c:503:20: warning: unused variable ‘n’ [-Wunused-variable] 503 | int err, nd, n, type; | ^ assp/ksv.c:503:16: warning: unused variable ‘nd’ [-Wunused-variable] 503 | int err, nd, n, type; | ^~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/myrint.c -o assp/myrint.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/trace.c -o assp/trace.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/aucheck.c -o assp/aucheck.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/fgetl.c -o assp/fgetl.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/labelobj.c -o assp/labelobj.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/numdecim.c -o assp/numdecim.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/winfuncs.c -o assp/winfuncs.o assp/winfuncs.c: In function ‘listWFs’: assp/winfuncs.c:1139:11: warning: unused variable ‘specs’ [-Wunused-variable] 1139 | WFDATA *specs; | ^~~~~ assp/winfuncs.c:1138:11: warning: unused variable ‘wPtr’ [-Wunused-variable] 1138 | WFLIST *wPtr; | ^~~~ assp/winfuncs.c:1137:14: warning: unused variable ‘m’ [-Wunused-variable] 1137 | int l, m; | ^ assp/winfuncs.c:1137:11: warning: unused variable ‘l’ [-Wunused-variable] 1137 | int l, m; | ^ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/auconv.c -o assp/auconv.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/filter.c -o assp/filter.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/lpc.c -o assp/lpc.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/parsepath.c -o assp/parsepath.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/zcr.c -o assp/zcr.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/bitarray.c -o assp/bitarray.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/filters.c -o assp/filters.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/math.c -o assp/math.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/rfc.c -o assp/rfc.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/chain.c -o assp/chain.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/fmt.c -o assp/fmt.o assp/fmt.c:1795:11: warning: ‘printRaw’ defined but not used [-Wunused-function] 1795 | LOCAL int printRaw(FMTDATA *fPtr, long frameNr, int numFMT, DOBJ *dop) | ^~~~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/memswab.c -o assp/memswab.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c assp/rms.c -o assp/rms.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dataobj.c -o dataobj.o dataobj.c: In function ‘dobj2AsspDataObj’: dataobj.c:170:21: warning: unused variable ‘genVar’ [-Wunused-variable] 170 | TSSFF_Generic *genVar = NULL; | ^~~~~~ dataobj.c: In function ‘getDObjTrackData’: dataobj.c:405:21: warning: variable ‘i8Ptr’ set but not used [-Wunused-but-set-variable] 405 | int8_t *i8Ptr; | ^~~~~ dataobj.c:397:21: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 397 | int i, | ^ dataobj.c: In function ‘sexp2dobj’: dataobj.c:608:21: warning: unused variable ‘varNames’ [-Wunused-variable] 608 | varNames; | ^~~~~~~~ dataobj.c:602:21: warning: unused variable ‘numFields’ [-Wunused-variable] 602 | size_t numFields = -1; | ^~~~~~~~~ dataobj.c: In function ‘addTrackData’: dataobj.c:894:21: warning: variable ‘i8Ptr’ set but not used [-Wunused-but-set-variable] 894 | int8_t *i8Ptr; | ^~~~~ dataobj.c:886:21: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 886 | int i, | ^ dataobj.c: At top level: dataobj.c:142:1: warning: ‘DObjFinalizer’ defined but not used [-Wunused-function] 142 | DObjFinalizer(SEXP dPtr) | ^~~~~~~~~~~~~ dataobj.c: In function ‘getDObjTrackData’: dataobj.c:413:21: warning: ‘Rans’ may be used uninitialized [-Wmaybe-uninitialized] 413 | double *Rans; | ^~~~ dataobj.c:414:21: warning: ‘Ians’ may be used uninitialized [-Wmaybe-uninitialized] 414 | int *Ians; | ^~~~ dataobj.c:404:21: warning: ‘u8Ptr’ may be used uninitialized [-Wmaybe-uninitialized] 404 | uint8_t *u8Ptr; | ^~~~~ dataobj.c: In function ‘addTrackData’: dataobj.c:933:30: warning: ‘u8Ptr’ may be used uninitialized [-Wmaybe-uninitialized] 933 | u8Ptr[n] = (int8_t) numPtr[m + n * dop->numRecords]; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dataobj.c:893:21: note: ‘u8Ptr’ was declared here 893 | uint8_t *u8Ptr; | ^~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c performAssp.c -o performAssp.o performAssp.c: In function ‘computeFilter’: performAssp.c:1231:21: warning: variable ‘FILE_IN’ set but not used [-Wunused-but-set-variable] 1231 | int FILE_IN, | ^~~~~~~ In file included from wrassp.h:5, from performAssp.c:1: performAssp.c: In function ‘performAssp’: /home/hornik/tmp/R-d-gcc-13/include/Rinternals.h:901:33: warning: ‘utilsPackage’ may be used uninitialized [-Wmaybe-uninitialized] 901 | #define eval Rf_eval performAssp.c:1188:13: note: in expansion of macro ‘eval’ 1188 | eval(R_fcall3, utilsPackage); | ^~~~ performAssp.c:490:9: note: ‘utilsPackage’ was declared here 490 | utilsPackage, /* to update the prograssbar */ | ^~~~~~~~~~~~ /home/hornik/tmp/R-d-gcc-13/include/Rinternals.h:969:33: warning: ‘newVal’ may be used uninitialized [-Wmaybe-uninitialized] 969 | #define lang4 Rf_lang4 /home/hornik/tmp/R-d-gcc-13/include/Rinternals.h:371:36: note: in definition of macro ‘PROTECT’ 371 | #define PROTECT(s) Rf_protect(s) | ^ performAssp.c:1186:32: note: in expansion of macro ‘lang4’ 1186 | PROTECT(R_fcall3 = lang4(install("setTxtProgressBar"), pBar, newVal, R_NilValue)); | ^~~~~ performAssp.c:491:9: note: ‘newVal’ was declared here 491 | newVal, | ^~~~~~ performAssp.c:1217:12: warning: ‘res’ may be used uninitialized [-Wmaybe-uninitialized] 1217 | return res; | ^~~ performAssp.c:488:21: note: ‘res’ was declared here 488 | res, | ^~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c types.c -o types.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I assp -DWRASSP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrassp_init.c -o wrassp_init.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o wrassp.so assp/acf.o assp/dataobj.o assp/freqconv.o assp/mhs.o assp/smp2dur.o assp/asspana.o assp/diff.o assp/headers.o assp/miscstring.o assp/spectra.o assp/asspfio.o assp/dsputils.o assp/isgerman.o assp/myrand.o assp/statistics.o assp/asspmess.o assp/fft.o assp/ksv.o assp/myrint.o assp/trace.o assp/aucheck.o assp/fgetl.o assp/labelobj.o assp/numdecim.o assp/winfuncs.o assp/auconv.o assp/filter.o assp/lpc.o assp/parsepath.o assp/zcr.o assp/bitarray.o assp/filters.o assp/math.o assp/rfc.o assp/chain.o assp/fmt.o assp/memswab.o assp/rms.o dataobj.o performAssp.o types.o wrassp_init.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUlFgc2/R.INSTALL1020f72db7242/wrassp/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-wrassp/00new/wrassp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wrassp) * installing *source* package ‘crqa’ ... ** package ‘crqa’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpf8ZTa5/R.INSTALL10f226e5b53b4/crqa/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-13 -fpic -g -O2 -Wall -mtune=native -c jspd.f -o jspd.o jspd.f:46:5: 46 | 1000 FORMAT(1H ,25f4.0) | 1 Warning: Label 1000 at (1) defined but not used [-Wunused-label] gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o crqa.so init.o jspd.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpf8ZTa5/R.INSTALL10f226e5b53b4/crqa/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-crqa/00new/crqa/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crqa) * installing *source* package ‘trelliscopejs’ ... ** package ‘trelliscopejs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (trelliscopejs) * installing *source* package ‘multiplex’ ... ** package ‘multiplex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multiplex) * installing *source* package ‘dpseg’ ... ** package ‘dpseg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpG69SNk/R.INSTALL10202ddc79e1/dpseg/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dpseg.cpp -o dpseg.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o dpseg.so RcppExports.o dpseg.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpG69SNk/R.INSTALL10202ddc79e1/dpseg/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-dpseg/00new/dpseg/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dpseg) * installing *source* package ‘maftools’ ... ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0pLgaC/R.INSTALL1083e3fad8a05/maftools/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ntcounts.c -o ntcounts.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c snpcounts.c -o snpcounts.o snpcounts.c: In function ‘snpcounts’: snpcounts.c:89:47: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 89 | fprintf(tsv_fp, "#idxstats_mapped_reads\t%llu\n", tot_mapped); | ~~~^ ~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rhtslib/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/zlibbioc/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c somaticfreq.c -o somaticfreq.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o maftools.so ntcounts.o snpcounts.o somaticfreq.o /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0pLgaC/R.INSTALL1083e3fad8a05/maftools/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-maftools/00new/maftools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maftools) * installing *source* package ‘kmer’ ... ** package ‘kmer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9ICbBH/R.INSTALL10e9331f901ef/kmer/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cpp -o distance.o distance.cpp: In function ‘Rcpp::NumericMatrix kcountDNA(Rcpp::List, int)’: distance.cpp:10:6: warning: unnecessary parentheses in declaration of ‘fourtopowerk’ [-Wparentheses] 10 | int(fourtopowerk) = 1; | ^~~~~~~~~~~~~~ distance.cpp:10:6: note: remove parentheses 10 | int(fourtopowerk) = 1; | ^~~~~~~~~~~~~~ | - - g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o kmer.so RcppExports.o distance.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9ICbBH/R.INSTALL10e9331f901ef/kmer/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-kmer/00new/kmer/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kmer) * installing *source* package ‘modeltime’ ... ** package ‘modeltime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (modeltime) begin installing package ‘modeltime.resample’ * installing *source* package ‘mvMORPH’ ... ** package ‘mvMORPH’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpe5ks1t/R.INSTALL1092c51b328bc/mvMORPH/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol_rpf_row.c -o chol_rpf_row.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol_rpf_univ.c -o chol_rpf_univ.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar-matrix-simmap.c -o covar-matrix-simmap.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c givens.c -o givens.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kronecker.c -o kronecker.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvMORPH_init.c -o mvMORPH_init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-mat.c -o mvmorph-covar-mat.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-ou-sparse.c -o mvmorph-covar-ou-sparse.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-ou.c -o mvmorph-covar-ou.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph_ou_mat_rpf.c -o mvmorph_ou_mat_rpf.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pic_loglik_mvmorph.c -o pic_loglik_mvmorph.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quadprod.c -o quadprod.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c root2tip.c -o root2tip.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spherical.c -o spherical.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sqrtMat.c -o sqrtMat.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c time_serie_expectation.c -o time_serie_expectation.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weight-matrix-mvmorph.c -o weight-matrix-mvmorph.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o mvMORPH.so chol_rpf_row.o chol_rpf_univ.o covar-matrix-simmap.o givens.o kronecker.o mvMORPH_init.o mvmorph-covar-mat.o mvmorph-covar-ou-sparse.o mvmorph-covar-ou.o mvmorph_ou_mat_rpf.o pic_loglik_mvmorph.o quadprod.o root2tip.o spherical.o sqrtMat.o time_serie_expectation.o utils.o weight-matrix-mvmorph.o -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpe5ks1t/R.INSTALL1092c51b328bc/mvMORPH/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-mvMORPH/00new/mvMORPH/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvMORPH) * installing *source* package ‘hts’ ... ** package ‘hts’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTbSDfS/R.INSTALL101c256e980fd/hts/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:205, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ RcppExports.cpp:17:39: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ RcppExports.cpp:17:39: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cgm_RcppEigen.cpp -o cgm_RcppEigen.o In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:205, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25, from cgm_RcppEigen.cpp:2: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ cgm_RcppEigen.cpp:20:39: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ cgm_RcppEigen.cpp:20:39: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::Stride<0, 0> > >’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, 0, Eigen::Stride<0, 0> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:148:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:222:7: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/MappedSparseMatrix.h:32:7: required from ‘class Eigen::MappedSparseMatrix’ cgm_RcppEigen.cpp:21:16: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ cgm_RcppEigen.cpp:23:25: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::OuterStride<> > >’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, 0, Eigen::OuterStride<> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::OuterStride<> >, 0>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:83:34: required from ‘class Eigen::internal::SparseRefBase, 0, Eigen::OuterStride<> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:37:41: required from ‘struct Eigen::internal::is_ref_compatible_impl >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:43:81: required from ‘struct Eigen::internal::is_ref_compatible >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:46:49: required from ‘class Eigen::IterativeSolverBase > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:158:7: required from ‘class Eigen::ConjugateGradient >’ cgm_RcppEigen.cpp:24:44: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h:41:43: required from ‘class Eigen::DiagonalPreconditioner’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:431:18: required from ‘class Eigen::IterativeSolverBase > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:158:7: required from ‘class Eigen::ConjugateGradient >’ cgm_RcppEigen.cpp:24:44: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl >, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >’ cgm_RcppEigen.cpp:28:33: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:282:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:217:9: required from ‘void Eigen::Ref, _Options, _StrideType>::construct(const Expression&, Eigen::internal::true_type) [with Expression = Eigen::Map, 0, Eigen::Stride<0, 0> >; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:190:16: required from ‘Eigen::Ref, _Options, _StrideType>::Ref(const Eigen::SparseMatrixBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:81:5: required from ‘void Eigen::internal::generic_matrix_wrapper::grab(const Eigen::EigenBase&) [with MatrixDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; MatrixType = Eigen::SparseMatrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:427:25: required from ‘void Eigen::IterativeSolverBase::grab(const InputType&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Derived = Eigen::ConjugateGradient >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:240:9: required from ‘Derived& Eigen::IterativeSolverBase::compute(const Eigen::EigenBase&) [with MatrixDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Derived = Eigen::ConjugateGradient >]’ cgm_RcppEigen.cpp:28:24: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 2>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0>, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0, 7>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:43:35: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0> >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0>, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> >, 1>, Eigen::Block, -1, 1, true>, 0> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:43:29: required from ‘void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::SparseSelfAdjointView, 0, Eigen::OuterStride<> >, 1>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::DiagonalPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:219:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from ‘class Eigen::SolveImpl, Eigen::Matrix, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from ‘class Eigen::Solve, Eigen::Matrix >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:64:20: required from ‘void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::SparseSelfAdjointView, 0, Eigen::OuterStride<> >, 1>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::DiagonalPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:219:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1>, Eigen::Matrix, 0>, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1>, Eigen::Matrix, 0> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1>, Eigen::Matrix, 0> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base, 0, Eigen::OuterStride<> >, 1>, Eigen::Matrix, 0, 7>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl, 0, Eigen::OuterStride<> >, 1>, Eigen::Matrix, 0, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, 0, Eigen::OuterStride<> >, 1>, Eigen::Matrix, 0>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:71:25: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:74:16: required from ‘void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::SparseSelfAdjointView, 0, Eigen::OuterStride<> >, 1>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::DiagonalPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:219:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:86:11: required from ‘void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::SparseSelfAdjointView, 0, Eigen::OuterStride<> >, 1>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::DiagonalPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:219:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:79:45: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:38:16: required from ‘Derived& Eigen::SparseMatrixBase::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Derived = Eigen::SparseMatrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1239:27: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:217:9: required from ‘void Eigen::Ref, _Options, _StrideType>::construct(const Expression&, Eigen::internal::true_type) [with Expression = Eigen::Map, 0, Eigen::Stride<0, 0> >; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:190:16: required from ‘Eigen::Ref, _Options, _StrideType>::Ref(const Eigen::SparseMatrixBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:81:5: required from ‘void Eigen::internal::generic_matrix_wrapper::grab(const Eigen::EigenBase&) [with MatrixDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; MatrixType = Eigen::SparseMatrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:427:25: required from ‘void Eigen::IterativeSolverBase::grab(const InputType&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Derived = Eigen::ConjugateGradient >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:240:9: required from ‘Derived& Eigen::IterativeSolverBase::compute(const Eigen::EigenBase&) [with MatrixDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Derived = Eigen::ConjugateGradient >]’ cgm_RcppEigen.cpp:28:24: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:45:40: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:55:50: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Block, -1, 1, true>; Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Block, -1, 1, true>]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:48:14: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:277: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, double>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >; Eigen::Index = long int]’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >; Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:45:40: required from ‘void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::SparseSelfAdjointView, 0, Eigen::OuterStride<> >, 1>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::DiagonalPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:219:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:55:50: required from ‘void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::SparseSelfAdjointView, 0, Eigen::OuterStride<> >, 1>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::DiagonalPreconditioner; Eigen::Index = long int; typename Dest::RealScalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:219:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = add_assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = Eigen::internal::add_assign_op; Weak = void]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = add_assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Derived = Eigen::Block, -1, 1, true>]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:74:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Eigen::Index = long int]’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::Matrix > >; Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:67:48: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:364:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseUtil.h:121:8: required from ‘struct Eigen::internal::plain_object_eval, 0, Eigen::OuterStride<> >, Eigen::Sparse>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseSelfAdjointView.h:351:53: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const LhsView&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; LhsView = Eigen::SparseSelfAdjointView, 0, Eigen::OuterStride<> >, 1>; Rhs = Eigen::Matrix; int ProductType = 7; typename Dest::Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::SparseSelfAdjointView, 0, Eigen::OuterStride<> >, 1>; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl, 0, Eigen::OuterStride<> >, 1>, Eigen::Matrix, Eigen::internal::SparseSelfAdjointShape, Eigen::DenseShape, 7>; Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h:91:26: required from ‘void Eigen::DiagonalPreconditioner<_Scalar>::_solve_impl(const Rhs&, Dest&) const [with Rhs = Eigen::Matrix; Dest = Eigen::Matrix; _Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > >, 0>’: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper >, Eigen::Dense>’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > >’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h:91:29: required from ‘void Eigen::DiagonalPreconditioner<_Scalar>::_solve_impl(const Rhs&, Dest&) const [with Rhs = Eigen::Matrix; Dest = Eigen::Matrix; _Scalar = double]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::ConjugateGradient >; RhsType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = double; SrcXprType = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = assign_op]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]’ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ cgm_RcppEigen.cpp:28:35: required from here /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o hts.so RcppExports.o cgm_RcppEigen.o -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTbSDfS/R.INSTALL101c256e980fd/hts/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-hts/00new/hts/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hts) begin installing package ‘thief’ * installing *source* package ‘UCell’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCell) * installing *source* package ‘thief’ ... ** package ‘thief’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (thief) * installing *source* package ‘evolqg’ ... ** package ‘evolqg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBppylx/R.INSTALL10a306c890c10/evolqg/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fast_RS.cpp -o fast_RS.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o evolqg.so RcppExports.o fast_RS.o -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBppylx/R.INSTALL10a306c890c10/evolqg/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-evolqg/00new/evolqg/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evolqg) * installing *source* package ‘phyclust’ ... ** package ‘phyclust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptkTZsd/R.INSTALL101e137ec14a7/phyclust/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust.c -o R_phyclust.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_edist.c -o R_phyclust_edist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_em_step.c -o R_phyclust_em_step.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_find_consensus.c -o R_phyclust_find_consensus.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_label.c -o R_phyclust_label.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_logL.c -o R_phyclust_logL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_logPt.c -o R_phyclust_logPt.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_qmatrix.c -o R_phyclust_qmatrix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_se.c -o R_phyclust_se.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_se_update.c -o R_phyclust_se_update.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_struct.c -o R_phyclust_struct.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_update.c -o R_phyclust_update.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRand.c -o RRand.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_RRand.c -o R_RRand.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_ape_nj.c -o phyclust/phyclust_ape_nj.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_edist.c -o phyclust/phyclust_edist.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_control.c -o phyclust/phyclust_em_control.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_fp.c -o phyclust/phyclust_em_fp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_phyclust_struct.c -o phyclust/phyclust_em_phyclust_struct.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_step.c -o phyclust/phyclust_em_step.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_tool.c -o phyclust/phyclust_em_tool.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_file_input.c -o phyclust/phyclust_file_input.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method.c -o phyclust/phyclust_init_method.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_ex.c -o phyclust/phyclust_init_method_ex.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_kmed.c -o phyclust/phyclust_init_method_kmed.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_nj.c -o phyclust/phyclust_init_method_nj.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_pam.c -o phyclust/phyclust_init_method_pam.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_procedure.c -o phyclust/phyclust_init_procedure.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_label.c -o phyclust/phyclust_label.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_logpL.c -o phyclust/phyclust_logpL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_optim_nmmin.c -o phyclust/phyclust_optim_nmmin.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_pam.c -o phyclust/phyclust_pam.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_qmatrix_array.c -o phyclust/phyclust_qmatrix_array.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_qmatrix.c -o phyclust/phyclust_qmatrix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_convolution_em_step.c -o phyclust/phyclust_se_convolution_em_step.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_convolution_em_tool.c -o phyclust/phyclust_se_convolution_em_tool.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_convolution_logpL.c -o phyclust/phyclust_se_convolution_logpL.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_em_fp.c -o phyclust/phyclust_se_em_fp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_em_phyclust_struct.c -o phyclust/phyclust_se_em_phyclust_struct.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_em_tool.c -o phyclust/phyclust_se_em_tool.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_pmatrix.c -o phyclust/phyclust_se_pmatrix.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_struct.c -o phyclust/phyclust_se_struct.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_struct.c -o phyclust/phyclust_struct.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_tool.c -o phyclust/phyclust_tool.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/ms.c -o msdir/ms.o msdir/ms.c: In function ‘gensam’: msdir/ms.c:291:4: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 291 | else if( segsitesin > 0 ) { | ^~~~ msdir/ms.c:337:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 337 | free(seglst); | ^~~~ msdir/ms.c: In function ‘gasdev’: msdir/ms.c:1149:22: warning: variable ‘gset’ set but not used [-Wunused-but-set-variable] 1149 | static float gset; | ^~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/ms_main.c -o msdir/ms_main.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/R_ms_main.c -o msdir/R_ms_main.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/R_rand.c -o msdir/R_rand.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/streec.c -o msdir/streec.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/aamodels.c -o seq-gen/aamodels.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/eigen.c -o seq-gen/eigen.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/evolve.c -o seq-gen/evolve.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/gamma.c -o seq-gen/gamma.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/global.c -o seq-gen/global.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/model.c -o seq-gen/model.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/nucmodels.c -o seq-gen/nucmodels.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/R_seq-gen_main.c -o seq-gen/R_seq-gen_main.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/seq-gen.c -o seq-gen/seq-gen.o seq-gen/seq-gen.c: In function ‘ReadFileParams’: seq-gen/seq-gen.c:715:15: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 715 | char *i; //WCC:add | ^ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/treefile.c -o seq-gen/treefile.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/twister.c -o seq-gen/twister.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c paml_baseml/baseml.c -o paml_baseml/baseml.o In file included from paml_baseml/baseml.c:130: paml_baseml/treesub.c: In function ‘ReadSeq’: paml_baseml/treesub.c:164:10: warning: variable ‘tmp_c’ set but not used [-Wunused-but-set-variable] 164 | char *tmp_c; | ^~~~~ paml_baseml/treesub.c:163:8: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 163 | int tmp; | ^~~ paml_baseml/treesub.c:160:9: warning: variable ‘str’ set but not used [-Wunused-but-set-variable] 160 | char str[4]=" "; | ^~~ paml_baseml/treesub.c:158:10: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 158 | int h,b[3]={0}; | ^ paml_baseml/treesub.c: In function ‘IdenticalSeqs’: paml_baseml/treesub.c:806:17: warning: variable ‘same’ set but not used [-Wunused-but-set-variable] 806 | int is,js,h, same,nkept=com.ns; | ^~~~ paml_baseml/treesub.c: In function ‘DistanceIJ’: paml_baseml/treesub.c:1709:16: warning: variable ‘missing’ set but not used [-Wunused-but-set-variable] 1709 | int h, n=4, missing=0; | ^~~~~~~ paml_baseml/treesub.c: In function ‘ReadTreeB’: paml_baseml/treesub.c:2393:10: warning: variable ‘tmp_c’ set but not used [-Wunused-but-set-variable] 2393 | char *tmp_c; //WCC:add | ^~~~~ paml_baseml/treesub.c:2392:8: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 2392 | int tmp; //WCC:add | ^~~ paml_baseml/treesub.c: In function ‘ReadTreeN’: paml_baseml/treesub.c:2601:10: warning: variable ‘tmp_c’ set but not used [-Wunused-but-set-variable] 2601 | char *tmp_c; //WCC:add | ^~~~~ paml_baseml/treesub.c:2600:8: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 2600 | int tmp; //WCC:add | ^~~ paml_baseml/treesub.c: In function ‘GetInitialsTimes’: paml_baseml/treesub.c:3417:10: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 3417 | for(i=0; iUNREST) GetStepMatrix(line); break; | ^~ paml_baseml/baseml.c:879:62: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 879 | if(com.model>UNREST) GetStepMatrix(line); break; | ^~~~~ paml_baseml/baseml.c: In function ‘SetxBound’: paml_baseml/paml.h:20:18: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 20 | #define FOR(i,n) for(i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 44 | for (int i = 0; i < pages.size(); i++) { | ~~^~~~~~~~~~~~~~ bindings.cpp: In function ‘Rcpp::CharacterVector cpp_pdf_combine(Rcpp::CharacterVector, const char*, const char*)’: bindings.cpp:87:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 87 | for (int i = 0; i < pages.size(); i++) { | ~~^~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/BitStream.cc -o libqpdf/BitStream.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/BitWriter.cc -o libqpdf/BitWriter.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Buffer.cc -o libqpdf/Buffer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/BufferInputSource.cc -o libqpdf/BufferInputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/ClosedFileInputSource.cc -o libqpdf/ClosedFileInputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/ContentNormalizer.cc -o libqpdf/ContentNormalizer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/FileInputSource.cc -o libqpdf/FileInputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/InputSource.cc -o libqpdf/InputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/InsecureRandomDataProvider.cc -o libqpdf/InsecureRandomDataProvider.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/JSON.cc -o libqpdf/JSON.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/MD5.cc -o libqpdf/MD5.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/OffsetInputSource.cc -o libqpdf/OffsetInputSource.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pipeline.cc -o libqpdf/Pipeline.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_AES_PDF.cc -o libqpdf/Pl_AES_PDF.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_ASCII85Decoder.cc -o libqpdf/Pl_ASCII85Decoder.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_ASCIIHexDecoder.cc -o libqpdf/Pl_ASCIIHexDecoder.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Buffer.cc -o libqpdf/Pl_Buffer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Concatenate.cc -o libqpdf/Pl_Concatenate.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Count.cc -o libqpdf/Pl_Count.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_DCT.cc -o libqpdf/Pl_DCT.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Discard.cc -o libqpdf/Pl_Discard.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_Flate.cc -o libqpdf/Pl_Flate.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_LZWDecoder.cc -o libqpdf/Pl_LZWDecoder.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_MD5.cc -o libqpdf/Pl_MD5.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_PNGFilter.cc -o libqpdf/Pl_PNGFilter.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_QPDFTokenizer.cc -o libqpdf/Pl_QPDFTokenizer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_RC4.cc -o libqpdf/Pl_RC4.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_RunLength.cc -o libqpdf/Pl_RunLength.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_SHA2.cc -o libqpdf/Pl_SHA2.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_StdioFile.cc -o libqpdf/Pl_StdioFile.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/Pl_TIFFPredictor.cc -o libqpdf/Pl_TIFFPredictor.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Array.cc -o libqpdf/QPDF_Array.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Bool.cc -o libqpdf/QPDF_Bool.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Dictionary.cc -o libqpdf/QPDF_Dictionary.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_encryption.cc -o libqpdf/QPDF_encryption.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_InlineImage.cc -o libqpdf/QPDF_InlineImage.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Integer.cc -o libqpdf/QPDF_Integer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_linearization.cc -o libqpdf/QPDF_linearization.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Name.cc -o libqpdf/QPDF_Name.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Null.cc -o libqpdf/QPDF_Null.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Operator.cc -o libqpdf/QPDF_Operator.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_optimization.cc -o libqpdf/QPDF_optimization.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_pages.cc -o libqpdf/QPDF_pages.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Real.cc -o libqpdf/QPDF_Real.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Reserved.cc -o libqpdf/QPDF_Reserved.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_Stream.cc -o libqpdf/QPDF_Stream.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF_String.cc -o libqpdf/QPDF_String.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/qpdf-c.cc -o libqpdf/qpdf-c.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDF.cc -o libqpdf/QPDF.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFAcroFormDocumentHelper.cc -o libqpdf/QPDFAcroFormDocumentHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFAnnotationObjectHelper.cc -o libqpdf/QPDFAnnotationObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFExc.cc -o libqpdf/QPDFExc.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFFormFieldObjectHelper.cc -o libqpdf/QPDFFormFieldObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFMatrix.cc -o libqpdf/QPDFMatrix.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFNameTreeObjectHelper.cc -o libqpdf/QPDFNameTreeObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFNumberTreeObjectHelper.cc -o libqpdf/QPDFNumberTreeObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFObject.cc -o libqpdf/QPDFObject.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFObjectHandle.cc -o libqpdf/QPDFObjectHandle.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFObjGen.cc -o libqpdf/QPDFObjGen.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFOutlineDocumentHelper.cc -o libqpdf/QPDFOutlineDocumentHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFOutlineObjectHelper.cc -o libqpdf/QPDFOutlineObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFPageDocumentHelper.cc -o libqpdf/QPDFPageDocumentHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFPageLabelDocumentHelper.cc -o libqpdf/QPDFPageLabelDocumentHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFPageObjectHelper.cc -o libqpdf/QPDFPageObjectHelper.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFSystemError.cc -o libqpdf/QPDFSystemError.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFTokenizer.cc -o libqpdf/QPDFTokenizer.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFWriter.cc -o libqpdf/QPDFWriter.o libqpdf/QPDFWriter.cc: In member function ‘void QPDFWriter::writeLinearized()’: libqpdf/QPDFWriter.cc:3089:9: warning: unused variable ‘after_part4’ [-Wunused-variable] 3089 | int after_part4 = this->m->next_objid; | ^~~~~~~~~~~ libqpdf/QPDFWriter.cc:3097:9: warning: unused variable ‘after_part6’ [-Wunused-variable] 3097 | int after_part6 = this->m->next_objid; | ^~~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QPDFXRefEntry.cc -o libqpdf/QPDFXRefEntry.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QTC.cc -o libqpdf/QTC.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/QUtil.cc -o libqpdf/QUtil.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/RC4.cc -o libqpdf/RC4.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/rijndael.cc -o libqpdf/rijndael.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c libqpdf/SecureRandomDataProvider.cc -o libqpdf/SecureRandomDataProvider.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libqpdf/sha2.c -o libqpdf/sha2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libqpdf/sha2big.c -o libqpdf/sha2big.o ar rcs libqpdf/libstatqpdf.a libqpdf/BitStream.o libqpdf/BitWriter.o libqpdf/Buffer.o libqpdf/BufferInputSource.o libqpdf/ClosedFileInputSource.o libqpdf/ContentNormalizer.o libqpdf/FileInputSource.o libqpdf/InputSource.o libqpdf/InsecureRandomDataProvider.o libqpdf/JSON.o libqpdf/MD5.o libqpdf/OffsetInputSource.o libqpdf/Pipeline.o libqpdf/Pl_AES_PDF.o libqpdf/Pl_ASCII85Decoder.o libqpdf/Pl_ASCIIHexDecoder.o libqpdf/Pl_Buffer.o libqpdf/Pl_Concatenate.o libqpdf/Pl_Count.o libqpdf/Pl_DCT.o libqpdf/Pl_Discard.o libqpdf/Pl_Flate.o libqpdf/Pl_LZWDecoder.o libqpdf/Pl_MD5.o libqpdf/Pl_PNGFilter.o libqpdf/Pl_QPDFTokenizer.o libqpdf/Pl_RC4.o libqpdf/Pl_RunLength.o libqpdf/Pl_SHA2.o libqpdf/Pl_StdioFile.o libqpdf/Pl_TIFFPredictor.o libqpdf/QPDF_Array.o libqpdf/QPDF_Bool.o libqpdf/QPDF_Dictionary.o libqpdf/QPDF_encryption.o libqpdf/QPDF_InlineImage.o libqpdf/QPDF_Integer.o libqpdf/QPDF_linearization.o libqpdf/QPDF_Name.o libqpdf/QPDF_Null.o libqpdf/QPDF_Operator.o libqpdf/QPDF_optimization.o libqpdf/QPDF_pages.o libqpdf/QPDF_Real.o libqpdf/QPDF_Reserved.o libqpdf/QPDF_Stream.o libqpdf/QPDF_String.o libqpdf/qpdf-c.o libqpdf/QPDF.o libqpdf/QPDFAcroFormDocumentHelper.o libqpdf/QPDFAnnotationObjectHelper.o libqpdf/QPDFExc.o libqpdf/QPDFFormFieldObjectHelper.o libqpdf/QPDFMatrix.o libqpdf/QPDFNameTreeObjectHelper.o libqpdf/QPDFNumberTreeObjectHelper.o libqpdf/QPDFObject.o libqpdf/QPDFObjectHandle.o libqpdf/QPDFObjGen.o libqpdf/QPDFOutlineDocumentHelper.o libqpdf/QPDFOutlineObjectHelper.o libqpdf/QPDFPageDocumentHelper.o libqpdf/QPDFPageLabelDocumentHelper.o libqpdf/QPDFPageObjectHelper.o libqpdf/QPDFSystemError.o libqpdf/QPDFTokenizer.o libqpdf/QPDFWriter.o libqpdf/QPDFXRefEntry.o libqpdf/QTC.o libqpdf/QUtil.o libqpdf/RC4.o libqpdf/rijndael.o libqpdf/SecureRandomDataProvider.o libqpdf/sha2.o libqpdf/sha2big.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o qpdf.so RcppExports.o bindings.o -Llibqpdf -lstatqpdf -ljpeg -lz -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEb3RQh/R.INSTALL101eb61da8f3e/qpdf/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-qpdf/00new/qpdf/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qpdf) begin installing package ‘tesseract’ begin installing package ‘dogesr’ * installing *source* package ‘dogesr’ ... ** package ‘dogesr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dogesr) * installing *source* package ‘tesseract’ ... ** package ‘tesseract’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/leptonica Using PKG_LIBS=-ltesseract -larchive -lcurl Using CXX11CPP: g++-13 -E -std=gnu++11 ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHv15ES/R.INSTALL1189e265ab2f0/tesseract/src' rm -f tesseract.so RcppExports.o tesseract.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/leptonica -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/include/leptonica -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c tesseract.cpp -o tesseract.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o tesseract.so RcppExports.o tesseract.o -ltesseract -larchive -lcurl -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHv15ES/R.INSTALL1189e265ab2f0/tesseract/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-tesseract/00new/tesseract/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tesseract) * installing *source* package ‘Gviz’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Gviz) * installing *source* package ‘multinet’ ... ** package ‘multinet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ using C++14 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsiFvIh/R.INSTALL1065c2d36221e/multinet/src' g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c r_functions.cpp -o r_functions.o r_functions.cpp: In function ‘RMLNetwork growMultiplex(size_t, long int, const Rcpp::GenericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericMatrix&)’: r_functions.cpp:149:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 149 | if (dependency.nrow()!=num_layers || dependency.ncol()!=num_layers || | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:149:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 149 | if (dependency.nrow()!=num_layers || dependency.ncol()!=num_layers || | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:150:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 150 | pr_internal_event.size()!=num_layers || pr_external_event.size()!=num_layers) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:150:77: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 150 | pr_internal_event.size()!=num_layers || pr_external_event.size()!=num_layers) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:157:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 157 | for (size_t i=0; i >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 1805 | if (vertices.size() != values.size() && values.size()!=1) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp:1873:26: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 1873 | if (edges.size() != values.size() && values.size()!=1) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp: In function ‘Rcpp::List to_list(const Rcpp::DataFrame&, const RMLNetwork&)’: r_functions.cpp:3260:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 3260 | for (size_t i=0; isize()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp:3347:28: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 3347 | else if (w_inter.size()==layers->size()) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp:3368:28: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 3368 | else if (gravity.size()==layers->size()) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from src/community/mlcpm.hpp:22, from r_functions.cpp:12: src/community/mlcpm.ipp: In instantiation of ‘std::unique_ptr > uu::net::mlcpm(const M*, size_t, size_t) [with M = MultilayerNetwork; size_t = long unsigned int]’: r_functions.cpp:3075:28: required from here src/community/mlcpm.ipp:35:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 35 | result->add(std::move(c->to_community())); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/community/mlcpm.ipp:35:20: note: remove ‘std::move’ call In file included from src/community/modularity.hpp:47, from r_functions.cpp:13: src/community/modularity.ipp: In instantiation of ‘double uu::net::modularity(const M*, const COMM*, double) [with M = MultilayerNetwork; COMM = CommunityStructure]’: r_functions.cpp:3203:31: required from here src/community/modularity.ipp:149:15: warning: unused variable ‘actor’ [-Wunused-variable] 149 | for (auto actor: *mnet->actors()) | ^~~~~ In file included from src/community/abacus.ipp:10, from src/community/abacus.hpp:30, from r_functions.cpp:8: src/community/_impl/PillarCommunity.hpp: In instantiation of ‘std::unique_ptr > uu::net::to_vertex_layer_community_structure(const std::set > >&) [with M = MultilayerNetwork]’: src/community/abacus.ipp:36:47: required from ‘std::unique_ptr > uu::net::abacus(const M*, int, int) [with M = MultilayerNetwork]’ r_functions.cpp:3131:42: required from here src/community/_impl/PillarCommunity.hpp:99:17: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 99 | res->add(std::move(to_vertex_layer_community(c.get()))); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/community/_impl/PillarCommunity.hpp:99:17: note: remove ‘std::move’ call r_functions.cpp: In function ‘Rcpp::DataFrame getValues(const RMLNetwork&, const std::string&, const Rcpp::DataFrame&, const Rcpp::DataFrame&, const Rcpp::DataFrame&)’: r_functions.cpp:1691:22: warning: ‘att’ may be used uninitialized [-Wmaybe-uninitialized] 1691 | res[att->name] = vec; | ~~~~~^~~~ r_functions.cpp:1572:36: note: ‘att’ was declared here 1572 | const uu::core::Attribute* att; | ^~~ r_functions.cpp:1558:22: warning: ‘att’ may be used uninitialized [-Wmaybe-uninitialized] 1558 | res[att->name] = vec; | ~~~~~^~~~ r_functions.cpp:1476:36: note: ‘att’ was declared here 1476 | const uu::core::Attribute* att; | ^~~ g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_module_definition.cpp -o rcpp_module_definition.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_utils.cpp -o rcpp_utils.o rcpp_utils.cpp: In function ‘std::vector > resolve_const_vertices(const uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:237:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 237 | for (int i=0; i > resolve_vertices(uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:278:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 278 | for (int i=0; i > resolve_const_edges(const uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:322:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 322 | for (int i=0; i > resolve_edges(uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:398:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 398 | for (int i=0; i > to_communities(const Rcpp::DataFrame&, const uu::net::MultilayerNetwork*)’: rcpp_utils.cpp:541:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 541 | for (size_t i=0; i::__cast(const std::chrono::duration<_Rep, _Period>&) [with _Rep = long double; _Period = std::ratio<1>; _ToDur = std::chrono::duration; _CF = std::ratio<1>; _CR = long double]’, inlined from ‘constexpr std::chrono::__enable_if_is_duration<_ToDur> std::chrono::duration_cast(const duration<_Rep, _Period>&) [with _ToDur = duration; _Rep = long double; _Period = std::ratio<1>]’ at /usr/include/c++/13/bits/chrono.h:287:23, inlined from ‘constexpr typename std::enable_if::value, To>::type date::trunc(const std::chrono::duration<_Rep, _Period>&) [with To = std::chrono::duration; Rep = long double; Period = std::ratio<1>]’ at src/core/attributes/date.hpp:1438:59, inlined from ‘constexpr typename std::enable_if::value, To>::type date::floor(const std::chrono::duration<_Rep, _Period>&) [with To = std::chrono::duration; Rep = long double; Period = std::ratio<1>]’ at src/core/attributes/date.hpp:1481:23, inlined from ‘constexpr To date::round(const std::chrono::duration<_Rep, _Period>&) [with To = std::chrono::duration; Rep = long double; Period = std::ratio<1>]’ at src/core/attributes/date.hpp:1511:24, inlined from ‘std::basic_istream<_CharT, _Traits>& date::from_stream(std::basic_istream<_CharT, _Traits>&, const CharT*, fields&, std::__cxx11::basic_string*, std::chrono::minutes*) [with CharT = char; Traits = std::char_traits; Duration = std::chrono::duration; Alloc = std::allocator]’ at src/core/attributes/date.hpp:8216:36: /usr/include/c++/13/bits/chrono.h:199:27: warning: ‘S’ may be used uninitialized [-Wmaybe-uninitialized] 199 | return _ToDur(static_cast<__to_rep>(__d.count())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/attributes/Time.hpp:18: src/core/attributes/date.hpp: In function ‘std::basic_istream<_CharT, _Traits>& date::from_stream(std::basic_istream<_CharT, _Traits>&, const CharT*, fields&, std::__cxx11::basic_string*, std::chrono::minutes*) [with CharT = char; Traits = std::char_traits; Duration = std::chrono::duration; Alloc = std::allocator]’: src/core/attributes/date.hpp:8214:37: note: ‘S’ was declared here 8214 | long double S; | ^ g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/core/attributes/AttributeType.cpp -o src/core/attributes/AttributeType.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/core/attributes/Time.cpp -o src/core/attributes/Time.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/core/observers/ObserverStore.cpp -o src/core/observers/ObserverStore.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/generation/communities.cpp -o src/generation/communities.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/generation/erdos_renyi.cpp -o src/generation/erdos_renyi.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/generation/standard_graphs.cpp -o src/generation/standard_graphs.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/read_ml_common.cpp -o src/io/_impl/read_ml_common.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/read_common.cpp -o src/io/_impl/read_common.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/GraphIOFileSection.cpp -o src/io/_impl/GraphIOFileSection.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_network.cpp -o src/io/read_network.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/write_multilayer_network.cpp -o src/io/write_multilayer_network.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_probabilistic_network.cpp -o src/io/read_probabilistic_network.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_weighted_network.cpp -o src/io/read_weighted_network.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_multilayer_network.cpp -o src/io/read_multilayer_network.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_temporal_network.cpp -o src/io/read_temporal_network.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/layout/multiforce.cpp -o src/layout/multiforce.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/MultilayerNetwork.cpp -o src/networks/MultilayerNetwork.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/Network.cpp -o src/networks/Network.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/LayerStore.cpp -o src/networks/_impl/stores/LayerStore.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/MLECubeStore.cpp -o src/networks/_impl/stores/MLECubeStore.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/VertexStore.cpp -o src/networks/_impl/stores/VertexStore.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/SimpleEdgeStore.cpp -o src/networks/_impl/stores/SimpleEdgeStore.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/MultiEdgeStore.cpp -o src/networks/_impl/stores/MultiEdgeStore.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/EdgeStore.cpp -o src/networks/_impl/stores/EdgeStore.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/observers/CheckVerticesExistObserver.cpp -o src/networks/_impl/observers/CheckVerticesExistObserver.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/observers/NoLoopCheckObserver2.cpp -o src/networks/_impl/observers/NoLoopCheckObserver2.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/OrderedMultiplexNetwork.cpp -o src/networks/OrderedMultiplexNetwork.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/MultiNetwork.cpp -o src/networks/MultiNetwork.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/weight.cpp -o src/networks/weight.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/probability.cpp -o src/networks/probability.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/time.cpp -o src/networks/time.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Dyad.cpp -o src/objects/Dyad.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Walk.cpp -o src/objects/Walk.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Triad.cpp -o src/objects/Triad.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Path.cpp -o src/objects/Path.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/MLVertex.cpp -o src/objects/MLVertex.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Trail.cpp -o src/objects/Trail.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Vertex.cpp -o src/objects/Vertex.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Edge.cpp -o src/objects/Edge.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/MECube.cpp -o src/olap/MECube.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/indexing.cpp -o src/olap/indexing.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/VCube.cpp -o src/olap/VCube.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/Indexes.cpp -o src/olap/sel/Indexes.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/Range.cpp -o src/olap/sel/Range.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/Set.cpp -o src/olap/sel/Set.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/All.cpp -o src/olap/sel/All.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/IndexIterator.cpp -o src/olap/sel/IndexIterator.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/ECube.cpp -o src/olap/ECube.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/time.cpp -o src/olap/time.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/operations/slice.cpp -o src/operations/slice.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/operations/sample.cpp -o src/operations/sample.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/utils/summary.cpp -o src/utils/summary.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/Network.cpp -o infomap/infomap/Network.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/FlowNetwork.cpp -o infomap/infomap/FlowNetwork.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/Node.cpp -o infomap/infomap/Node.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/TreeData.cpp -o infomap/infomap/TreeData.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/InfomapContext.cpp -o infomap/infomap/InfomapContext.o In file included from infomap/infomap/InfomapGreedyTypeSpecialized.h:31, from infomap/infomap/InfomapContext.cpp:30: infomap/infomap/InfomapGreedyCommon.h:1022: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1022 | #pragma omp parallel for schedule(dynamic) // Use dynamic scheduling as some threads could end early | infomap/infomap/InfomapGreedyCommon.h:1184: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1184 | #pragma omp critical (moveUpdate) | g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/NetworkAdapter.cpp -o infomap/infomap/NetworkAdapter.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MultiplexNetwork.cpp -o infomap/infomap/MultiplexNetwork.o infomap/infomap/MultiplexNetwork.cpp: In member function ‘std::map::const_iterator* infomap::MultiplexNetwork::getUndirLinkItPtr(std::vector >, std::_Rb_tree_const_iterator > > >&)’: infomap/infomap/MultiplexNetwork.cpp:1090:12: warning: ‘linkIt’ may be used uninitialized [-Wmaybe-uninitialized] 1090 | return linkIt; | ^~~~~~ infomap/infomap/MultiplexNetwork.cpp:1068:35: note: ‘linkIt’ was declared here 1068 | IntraLinkMap::const_iterator *linkIt; | ^~~~~~ g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MemoryNetworkAdapter.cpp -o infomap/infomap/MemoryNetworkAdapter.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MemNetwork.cpp -o infomap/infomap/MemNetwork.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MemFlowNetwork.cpp -o infomap/infomap/MemFlowNetwork.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/InfomapBase.cpp -o infomap/infomap/InfomapBase.o infomap/infomap/InfomapBase.cpp:1946: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1946 | #pragma omp parallel for schedule(dynamic) | g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/HierarchicalNetwork.cpp -o infomap/io/HierarchicalNetwork.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/TreeDataWriter.cpp -o infomap/io/TreeDataWriter.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/BipartiteClusterReader.cpp -o infomap/io/BipartiteClusterReader.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/version.cpp -o infomap/io/version.o infomap/io/version.cpp:34:20: warning: ‘INFOMAP_VERSION’ initialized and declared ‘extern’ 34 | extern const char* INFOMAP_VERSION = "0.19.15"; | ^~~~~~~~~~~~~~~ g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/ClusterReader.cpp -o infomap/io/ClusterReader.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/ProgramInterface.cpp -o infomap/io/ProgramInterface.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/utils/FileURI.cpp -o infomap/utils/FileURI.o g++-13 -std=gnu++14 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Ieigen3 -Ispectra -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/utils/Logger.cpp -o infomap/utils/Logger.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/apriori/src/istree.c -o eclat/apriori/src/istree.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/eclat/src/eclat.c -o eclat/eclat/src/eclat.o eclat/eclat/src/eclat.c: In function ‘rec_odcm’: eclat/eclat/src/eclat.c:3485:30: warning: ‘r’ may be used uninitialized [-Wmaybe-uninitialized] 3485 | return (r < 0) ? (SUPP)r : max; /* return error status/max. support */ | ~~~~~~~~~~~~~~~~~~^~~~~ eclat/eclat/src/eclat.c:3365:16: note: ‘r’ was declared here 3365 | int r; /* error status */ | ^ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/math/src/chi2.c -o eclat/math/src/chi2.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/math/src/gamma.c -o eclat/math/src/gamma.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/math/src/ruleval.c -o eclat/math/src/ruleval.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/report.c -o eclat/tract/src/report.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/tract.c -o eclat/tract/src/tract.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/patspec.c -o eclat/tract/src/patspec.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/fim16.c -o eclat/tract/src/fim16.o eclat/tract/src/fim16.c: In function ‘rec_pos’: eclat/tract/src/fim16.c:795:5: warning: ‘memset’ used with length equal to number of elements without multiplication by element size [-Wmemset-elt-size] 795 | memset(fim->supps, 0, 4*sizeof(SUPP)); /* support and lists */ | ^~~~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/clomax.c -o eclat/tract/src/clomax.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/scanner.c -o eclat/util/src/scanner.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/arrays.c -o eclat/util/src/arrays.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/escape.c -o eclat/util/src/escape.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/memsys.c -o eclat/util/src/memsys.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/tabread.c -o eclat/util/src/tabread.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/tabwrite.c -o eclat/util/src/tabwrite.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/symtab.c -o eclat/util/src/symtab.o g++-13 -std=gnu++14 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o multinet.so RcppExports.o init.o r_functions.o rcpp_module_definition.o rcpp_utils.o src/community/_impl/common.o src/community/_impl/glouvain2_utils.o src/community/_impl/MetaNetwork.o src/community/_impl/GMetaNetwork.o src/community/_impl/louvain_utils.o src/community/optimize_slices.o src/core/objects/Object.o src/core/utils/random.o src/core/utils/NameIterator.o src/core/utils/string.o src/core/utils/CSVReader.o src/core/utils/vector.o src/core/exceptions/NullPtrException.o src/core/exceptions/FileNotFoundException.o src/core/exceptions/assert_not_null.o src/core/exceptions/DuplicateElementException.o src/core/exceptions/ExternalLibException.o src/core/exceptions/ElementNotFoundException.o src/core/exceptions/OutOfBoundsException.o src/core/exceptions/OperationNotSupportedException.o src/core/exceptions/WrongParameterException.o src/core/exceptions/WrongFormatException.o src/core/attributes/Text.o src/core/attributes/Attribute.o src/core/attributes/conversion.o src/core/attributes/AttributeType.o src/core/attributes/Time.o src/core/observers/ObserverStore.o src/generation/communities.o src/generation/erdos_renyi.o src/generation/standard_graphs.o src/io/_impl/read_ml_common.o src/io/_impl/read_common.o src/io/_impl/GraphIOFileSection.o src/io/read_network.o src/io/write_multilayer_network.o src/io/read_probabilistic_network.o src/io/read_weighted_network.o src/io/read_multilayer_network.o src/io/read_temporal_network.o src/layout/multiforce.o src/networks/MultilayerNetwork.o src/networks/Network.o src/networks/_impl/stores/LayerStore.o src/networks/_impl/stores/MLECubeStore.o src/networks/_impl/stores/VertexStore.o src/networks/_impl/stores/SimpleEdgeStore.o src/networks/_impl/stores/MultiEdgeStore.o src/networks/_impl/stores/EdgeStore.o src/networks/_impl/observers/CheckVerticesExistObserver.o src/networks/_impl/observers/NoLoopCheckObserver2.o src/networks/OrderedMultiplexNetwork.o src/networks/MultiNetwork.o src/networks/weight.o src/networks/probability.o src/networks/time.o src/objects/Dyad.o src/objects/Walk.o src/objects/Triad.o src/objects/Path.o src/objects/MLVertex.o src/objects/Trail.o src/objects/Vertex.o src/objects/Edge.o src/olap/MECube.o src/olap/indexing.o src/olap/VCube.o src/olap/sel/Indexes.o src/olap/sel/Range.o src/olap/sel/Set.o src/olap/sel/All.o src/olap/sel/IndexIterator.o src/olap/ECube.o src/olap/time.o src/operations/slice.o src/operations/sample.o src/utils/summary.o infomap/infomap/Network.o infomap/infomap/FlowNetwork.o infomap/infomap/Node.o infomap/infomap/TreeData.o infomap/infomap/InfomapContext.o infomap/infomap/NetworkAdapter.o infomap/infomap/MultiplexNetwork.o infomap/infomap/MemoryNetworkAdapter.o infomap/infomap/MemNetwork.o infomap/infomap/MemFlowNetwork.o infomap/infomap/InfomapBase.o infomap/io/HierarchicalNetwork.o infomap/io/TreeDataWriter.o infomap/io/BipartiteClusterReader.o infomap/io/version.o infomap/io/ClusterReader.o infomap/io/ProgramInterface.o infomap/utils/FileURI.o infomap/utils/Logger.o eclat/apriori/src/istree.o eclat/eclat/src/eclat.o eclat/math/src/chi2.o eclat/math/src/gamma.o eclat/math/src/ruleval.o eclat/tract/src/report.o eclat/tract/src/tract.o eclat/tract/src/patspec.o eclat/tract/src/fim16.o eclat/tract/src/clomax.o eclat/util/src/scanner.o eclat/util/src/arrays.o eclat/util/src/escape.o eclat/util/src/memsys.o eclat/util/src/tabread.o eclat/util/src/tabwrite.o eclat/util/src/symtab.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsiFvIh/R.INSTALL1065c2d36221e/multinet/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-multinet/00new/multinet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multinet) checking qpdf_1.3.3.tar.gz ... checking anabel_3.0.1.tar.gz ... checking AssetCorr_1.0.4.tar.gz ... checking CLimd_0.1.0.tar.gz ... checking colordistance_1.1.2.tar.gz ... checking ddiv_0.1.1.tar.gz ... checking dogesr_0.5.0.tar.gz ... checking fssemR_0.1.8.tar.gz ... checking GWRLASSO_0.1.0.tar.gz ... checking JustifyAlpha_0.1.1.tar.gz ... checking LoBrA_1.0.tar.gz ... checking MARSGWR_0.1.0.tar.gz ... checking MiRNAQCD_1.1.3.tar.gz ... checking pdftools_3.4.0.tar.gz ... checking robin_1.1.2.tar.gz ... checking psdr_1.0.1.tar.gz ... checking RTIGER_2.1.0.tar.gz ... checking SherlockHolmes_1.0.1.tar.gz ... checking SmartEDA_0.3.10.tar.gz ... checking SpatGRID_0.1.0.tar.gz ... checking SpatialPOP_0.1.0.tar.gz ... checking SpPOP_0.1.0.tar.gz ... checking statcanR_0.2.6.tar.gz ... checking StepGWR_0.1.0.tar.gz ... checking xmrr_1.1.1.tar.gz ... checking amerifluxr_1.0.0.tar.gz ... checking aphid_1.3.5.tar.gz ... checking bpnreg_2.0.3.tar.gz ... checking r2country_2.0.2.3.1.tar.gz ... checking HyRiM_2.0.2.tar.gz ... checking PressPurt_1.0.2.tar.gz ... checking profiplots_0.2.3.tar.gz ... checking leiden_0.4.3.1.tar.gz ... checking r2dictionary_0.2.tar.gz ... checking FixedPoint_0.6.3.tar.gz ... checking modeltime_1.2.8.tar.gz ... checking modeltime.ensemble_1.0.3.tar.gz ... checking HurreconR_1.1.tar.gz ... checking quickcode_0.7.tar.gz ... checking gkgraphR_1.0.2.tar.gz ... checking r2shortcode_0.1.tar.gz ... checking fractalRegression_1.2.tar.gz ... checking corrmeta_1.0.0.tar.gz ... checking oRus_1.0.0.tar.gz ... checking VSOLassoBag_0.99.1.tar.gz ... checking hopit_0.11.6.tar.gz ... checking ExposR_1.1.tar.gz ... checking communication_0.1.tar.gz ... checking shapper_0.1.3.tar.gz ... checking r2symbols_1.4.tar.gz ... checking RRphylo_2.8.0.tar.gz ... checking Pandora_24.2.0.tar.gz ... checking synthesis_1.2.4.tar.gz ... checking ftExtra_0.6.2.tar.gz ... checking multiclassPairs_0.4.3.tar.gz ... checking multirich_2.1.3.tar.gz ... checking caracas_2.1.1.tar.gz ... checking tidyHeatmap_1.8.1.tar.gz ... checking SCpubr_2.0.2.tar.gz ... checking pathwayTMB_0.1.3.tar.gz ... checking dupNodes_0.2.0.tar.gz ... checking xmpdf_0.1.4.tar.gz ... checking VedicDateTime_0.1.9.tar.gz ... checking shinyStorePlus_1.1.tar.gz ... checking treefit_1.0.2.tar.gz ... checking scpoisson_0.0.1.tar.gz ... Depends: Package: qpdf Imports: Rcpp, askpass, curl LinkingTo: Rcpp Timings: user system elapsed qpdf 139.287 10.821 151.99 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 12 53 Check results summary: qpdf ... OK rdepends_amerifluxr ... OK rdepends_anabel ... OK rdepends_aphid ... NOTE * checking C++ specification ... NOTE rdepends_AssetCorr ... OK rdepends_bpnreg ... OK rdepends_caracas ... OK rdepends_CLimd ... OK rdepends_colordistance ... NOTE * checking Rd files ... [0s/0s] NOTE * checking LazyData ... NOTE rdepends_communication ... NOTE * checking C++ specification ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_corrmeta ... OK rdepends_ddiv ... OK rdepends_dogesr ... OK rdepends_dupNodes ... OK rdepends_ExposR ... OK rdepends_FixedPoint ... OK rdepends_fractalRegression ... OK rdepends_fssemR ... NOTE * checking C++ specification ... NOTE rdepends_ftExtra ... OK rdepends_gkgraphR ... NOTE * checking package subdirectories ... NOTE rdepends_GWRLASSO ... OK rdepends_hopit ... OK rdepends_HurreconR ... OK rdepends_HyRiM ... OK rdepends_JustifyAlpha ... OK rdepends_leiden ... OK rdepends_LoBrA ... OK rdepends_MARSGWR ... OK rdepends_MiRNAQCD ... OK rdepends_modeltime.ensemble ... OK rdepends_modeltime ... OK rdepends_multiclassPairs ... OK rdepends_multirich ... OK rdepends_oRus ... NOTE * checking LazyData ... NOTE rdepends_Pandora ... OK rdepends_pathwayTMB ... OK rdepends_pdftools ... OK rdepends_PressPurt ... NOTE * checking LazyData ... NOTE rdepends_profiplots ... OK rdepends_psdr ... OK rdepends_quickcode ... OK rdepends_r2country ... OK rdepends_r2dictionary ... OK rdepends_r2shortcode ... NOTE * checking LazyData ... NOTE rdepends_r2symbols ... OK rdepends_robin ... OK rdepends_RRphylo ... OK rdepends_RTIGER ... OK rdepends_scpoisson ... NOTE * checking Rd files ... [1s/2s] NOTE rdepends_SCpubr ... OK rdepends_shapper ... NOTE * checking LazyData ... NOTE rdepends_SherlockHolmes ... OK rdepends_shinyStorePlus ... OK rdepends_SmartEDA ... OK rdepends_SpatGRID ... OK rdepends_SpatialPOP ... OK rdepends_SpPOP ... OK rdepends_statcanR ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_StepGWR ... OK rdepends_synthesis ... OK rdepends_tidyHeatmap ... OK rdepends_treefit ... OK rdepends_VedicDateTime ... OK rdepends_VSOLassoBag ... OK rdepends_xmpdf ... OK rdepends_xmrr ... NOTE * checking LazyData ... NOTE