* installing *source* package ‘qgg’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-8) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c bedfunc.cpp -o bedfunc.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c bigreml.f90 -o bigreml.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c gbayes.cpp -o gbayes.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c grsbed.cpp -o grsbed.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c mtgbayes.cpp -o mtgbayes.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -flto -c qgg_init.c -o qgg_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c solvebed.cpp -o solvebed.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c sparseld.cpp -o sparseld.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-LTO/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -flto -DR_NO_REMAP -c utility.cpp -o utility.o g++-14 -std=gnu++17 -shared -g -O2 -Wall -pedantic -mtune=native -flto -fpic -L/home/hornik/tmp/R-d-gcc-LTO/lib -Wl,-O1 -o qgg.so RcppExports.o bedfunc.o bigreml.o gbayes.o grsbed.o mtgbayes.o qgg_init.o solvebed.o sparseld.o utility.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-LTO/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-LTO/lib -lR qgg_init.c:22:13: warning: type of ‘_qgg_sbayes’ does not match original declaration [-Wlto-type-mismatch] 22 | extern SEXP _qgg_sbayes(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP); | ^ RcppExports.cpp:107:17: note: type mismatch in parameter 32 107 | RcppExport SEXP _qgg_sbayes(SEXP yySEXP, SEXP wySEXP, SEXP wwSEXP, SEXP LDvaluesSEXP, SEXP LDindicesSEXP, SEXP bSEXP, SEXP lambdaSEXP, SEXP maskSEXP, SEXP piSEXP, SEXP gammaSEXP, SEXP vgSEXP, SEXP vbSEXP, SEXP veSEXP, SEXP ssb_priorSEXP, SEXP ssg_priorSEXP, SEXP sse_priorSEXP, SEXP nubSEXP, SEXP nugSEXP, SEXP nueSEXP, SEXP updateBSEXP, SEXP updateGSEXP, SEXP updateESEXP, SEXP updatePiSEXP, SEXP adjustESEXP, SEXP nSEXP, SEXP nitSEXP, SEXP nburnSEXP, SEXP nthinSEXP, SEXP methodSEXP, SEXP algoSEXP, SEXP seedSEXP) { | ^ RcppExports.cpp:107:17: note: type ‘void’ should match type ‘struct SEXPREC *’ RcppExports.cpp:107:17: note: ‘_qgg_sbayes’ was previously declared here lto-wrapper: warning: using serial compilation of 6 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information installing to /home/hornik/tmp/CRAN_special_LTO/qgg.Rcheck/00LOCK-qgg/00new/qgg/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qgg)