* using log directory 'd:/RCompile/CRANincoming/R-devel/qeML.Rcheck' * using R Under development (unstable) (2023-09-19 r85177 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'qeML/DESCRIPTION' ... OK * this is package 'qeML' version '1.1' * checking CRAN incoming feasibility ... [11s] NOTE Maintainer: 'Norm Matloff ' New submission Found the following (possibly) invalid URLs: URL: https://www.datacamp.com/community/tutorials/diving-deep-imbalanced-data (moved to https://www.datacamp.com/tutorial/diving-deep-imbalanced-data) From: inst/doc/Unbalanced_Classes.html Status: 301 Message: Moved Permanently URL: https:en.wikipedia.org/wiki/Stein%27s_example From: inst/doc/ML_Overview.html Status: Error Message: URL using bad/illegal format or missing URL For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. Found the following (possibly) invalid file URI: URI: heather.cs.ucdavis.edu/matloff.html From: README.md * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'qeML' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [24s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented data sets: 'MissedAppts' 'falldetection' 'lsa' 'oneksongs' All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... NOTE File 'data/datalist' is out-of-date: Data files in 'datalist' not in 'data' directory: MissedAppts falldetection lsa oneksongs Data objects in 'datalist' not in 'data' directory: MissedAppts falldetection lsa oneksongs Please re-create using tools::add_datalist(force = TRUE). * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress IranianChurn.RData 124Kb 96Kb xz ThyroidDisease.RData 42Kb 25Kb xz day.RData 25Kb 18Kb xz day1.RData 27Kb 20Kb xz day2.RData 24Kb 19Kb xz empAttrition.RData 40Kb 26Kb xz english.RData 32Kb 15Kb xz forest500.RData 11Kb 8Kb xz mlens.RData 19Kb 12Kb xz nyctaxi.RData 112Kb 83Kb xz phoneme.RData 181Kb 131Kb xz prgeng.RData 192Kb 156Kb xz quizDocs.RData 122Kb 98Kb bzip2 quizzes.RData 101Kb 85Kb xz svcensus.RData 241Kb 159Kb xz weatherTS.RData 40Kb 23Kb xz * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building 'Feature_Selection.Rmd' using rmarkdown --- finished re-building 'Feature_Selection.Rmd' --- re-building 'Function_List.Rmd' using rmarkdown --- finished re-building 'Function_List.Rmd' --- re-building 'ML_Overview.Rmd' using rmarkdown Error: processing vignette 'ML_Overview.Rmd' failed with diagnostics: there is no package called 'tufte' --- failed re-building 'ML_Overview.Rmd' --- re-building 'NoPValues.Rmd' using rmarkdown Error: processing vignette 'NoPValues.Rmd' failed with diagnostics: there is no package called 'tufte' --- failed re-building 'NoPValues.Rmd' --- re-building 'Overfitting.Rmd' using rmarkdown Error: processing vignette 'Overfitting.Rmd' failed with diagnostics: there is no package called 'tufte' --- failed re-building 'Overfitting.Rmd' --- re-building 'PCA_and_UMAP.Rmd' using rmarkdown Error: processing vignette 'PCA_and_UMAP.Rmd' failed with diagnostics: there is no package called 'tufte' --- failed re-building 'PCA_and_UMAP.Rmd' --- re-building 'Quick_Start.Rmd' using rmarkdown --- finished re-building 'Quick_Start.Rmd' --- re-building 'Unbalanced_Classes.Rmd' using rmarkdown Error: processing vignette 'Unbalanced_Classes.Rmd' failed with diagnostics: there is no package called 'tufte' --- failed re-building 'Unbalanced_Classes.Rmd' SUMMARY: processing the following files failed: 'ML_Overview.Rmd' 'NoPValues.Rmd' 'Overfitting.Rmd' 'PCA_and_UMAP.Rmd' 'Unbalanced_Classes.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [23s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 2 WARNINGs, 2 NOTEs