* installing *source* package ‘qcluster’ ... ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.4 (1)’ clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rsample_from.c -o Rsample_from.o Rsample_from.c:46:9: warning: variable 'totiter' set but not used [-Wunused-but-set-variable] 46 | int totiter = 0; | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c alloc_utils.c -o alloc_utils.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cluster_to_triplets.c -o cluster_to_triplets.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ecm.c -o ecm.o ecm.c:67:9: warning: variable 'iter' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 67 | if (sumtau) { | ^~~~~~ ecm.c:617:16: note: uninitialized use occurs here 617 | res.iter = iter; | ^~~~ ecm.c:67:5: note: remove the 'if' if its condition is always true 67 | if (sumtau) { | ^~~~~~~~~~~ 68 | alloctable_add(&head, sumtau, 1, 'A'); 69 | first_head = head; 70 | } else { | ~~~~~~ 71 | warning | ~~~~~~~ 72 | ("ecm.c (ERR_MALLOC): not able to allocate sumtau (%d)-vector", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | K); | ~~~ 74 | info = -100; | ~~~~~~~~~~~~ 75 | goto output; | ~~~~~~~~~~~~ 76 | } | ~ ecm.c:90:5: note: variable 'iter' is declared here 90 | int iter = 0; | ^ 1 warning generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ecm_winit.c -o ecm_winit.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gss.c -o gss.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c helper_score_smd.c -o helper_score_smd.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c kmedians.c -o kmedians.o kmedians.c:78:9: warning: variable 'assigned_cluster' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 78 | if (cluster_marginal) | ^~~~~~~~~~~~~~~~ kmedians.c:137:10: note: uninitialized use occurs here 137 | free(assigned_cluster); | ^~~~~~~~~~~~~~~~ kmedians.c:78:5: note: remove the 'if' if its condition is always true 78 | if (cluster_marginal) | ^~~~~~~~~~~~~~~~~~~~~ 79 | alloctable_add(&head, cluster_marginal, 0, 'C'); | ~ 80 | else { | ~~~~~~ 81 | warning | ~~~~~~~ 82 | ("kmedians.c (ERR_MALLOC): not able to allocate cluster_marginal (%d)-array", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 | N); | ~~~ 84 | success = 0; | ~~~~~~~~~~~~ 85 | goto output; | ~~~~~~~~~~~~ 86 | } | ~ kmedians.c:66:9: warning: variable 'assigned_cluster' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 66 | if (l1_dist) | ^~~~~~~ kmedians.c:137:10: note: uninitialized use occurs here 137 | free(assigned_cluster); | ^~~~~~~~~~~~~~~~ kmedians.c:66:5: note: remove the 'if' if its condition is always true 66 | if (l1_dist) | ^~~~~~~~~~~~ 67 | alloctable_add(&head, l1_dist, 0, 'B'); | ~ 68 | else { | ~~~~~~ 69 | warning | ~~~~~~~ 70 | ("kmedians.c (ERR_MALLOC): not able to allocate l1_dist (%d, %d)-array", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | N, K); | ~~~~~~ 72 | success = 0; | ~~~~~~~~~~~~ 73 | goto output; | ~~~~~~~~~~~~ 74 | } | ~ kmedians.c:51:9: warning: variable 'assigned_cluster' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 51 | if (MM) | ^~ kmedians.c:137:10: note: uninitialized use occurs here 137 | free(assigned_cluster); | ^~~~~~~~~~~~~~~~ kmedians.c:51:5: note: remove the 'if' if its condition is always true 51 | if (MM) | ^~~~~~~ 52 | alloctable_add(&head, MM, 1, 'A'); | ~ 53 | else { | ~~~~~~ 54 | warning | ~~~~~~~ 55 | ("kmedians.c (ERR_MALLOC): not able to allocate MM (%d, %d)-array", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | K, P); | ~~~~~~ 57 | success = 0; | ~~~~~~~~~~~~ 58 | goto output; | ~~~~~~~~~~~~ 59 | } | ~ kmedians.c:90:5: note: variable 'assigned_cluster' is declared here 90 | int *assigned_cluster = malloc(N * sizeof(int)); /* Store cluster memberships */ | ^ 3 warnings generated. clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c quickselect.c -o quickselect.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c score_hard.c -o score_hard.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c score_hard_cluster.c -o score_hard_cluster.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c score_smooth.c -o score_smooth.o clang-19 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c score_smooth_cluster.c -o score_smooth_cluster.o clang-19 -shared -L/home/hornik/tmp/R-d-clang-19/lib -Wl,-O1 -o qcluster.so Rsample_from.o alloc_utils.o cluster_to_triplets.o ecm.o ecm_winit.o gss.o helper_score_smd.o init.o kmedians.o quickselect.o score_hard.o score_hard_cluster.o score_smooth.o score_smooth_cluster.o -llapack -L/home/hornik/tmp/R-d-clang-19/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-19/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/qcluster.Rcheck/00LOCK-qcluster/00new/qcluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qcluster)