* installing *source* package ‘pythonR’ ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
Install miniconda? Downloads ~50MB and takes time (Yes/no/cancel) 
* Installing Miniconda -- please wait a moment ...
* Downloading 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh' ...
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh'
Content type 'application/octet-stream' length 144041912 bytes (137.4 MB)
==================================================
downloaded 137.4 MB

PREFIX=/tmp/check-CRAN-incoming-hornik/data/r-miniconda
Unpacking payload ...

  0%|          | 0/73 [00:00<?, ?it/s]
Extracting : pip-23.3.1-py312h06a4308_0.conda:   0%|          | 0/73 [00:00<?, ?it/s]
Extracting : pip-23.3.1-py312h06a4308_0.conda:   1%|▏         | 1/73 [00:00<00:30,  2.33it/s]
Extracting : libsolv-0.7.24-he621ea3_0.conda:   1%|▏         | 1/73 [00:00<00:30,  2.33it/s] 
Extracting : pysocks-1.7.1-py312h06a4308_0.conda:   3%|▎         | 2/73 [00:00<00:30,  2.33it/s]
Extracting : conda-package-handling-2.2.0-py312h06a4308_0.conda:   4%|▍         | 3/73 [00:00<00:30,  2.33it/s]
Extracting : libgomp-11.2.0-h1234567_1.conda:   5%|▌         | 4/73 [00:00<00:29,  2.33it/s]                   
Extracting : icu-73.1-h6a678d5_0.conda:   7%|▋         | 5/73 [00:00<00:29,  2.33it/s]      
Extracting : ruamel.yaml-0.17.21-py312h5eee18b_0.conda:   8%|▊         | 6/73 [00:00<00:28,  2.33it/s]
Extracting : tzdata-2023d-h04d1e81_0.conda:  10%|▉         | 7/73 [00:00<00:28,  2.33it/s]            
Extracting : c-ares-1.19.1-h5eee18b_0.conda:  11%|█         | 8/73 [00:00<00:27,  2.33it/s]
Extracting : ncurses-6.4-h6a678d5_0.conda:  12%|█▏        | 9/73 [00:00<00:27,  2.33it/s]  
Extracting : ncurses-6.4-h6a678d5_0.conda:  14%|█▎        | 10/73 [00:00<00:04, 13.21it/s]
Extracting : truststore-0.8.0-py312h06a4308_0.conda:  14%|█▎        | 10/73 [00:00<00:04, 13.21it/s]
Extracting : archspec-0.2.1-pyhd3eb1b0_0.conda:  15%|█▌        | 11/73 [00:00<00:04, 13.21it/s]     
Extracting : bzip2-1.0.8-h7b6447c_0.conda:  16%|█▋        | 12/73 [00:00<00:04, 13.21it/s]     
Extracting : boltons-23.0.0-py312h06a4308_0.conda:  18%|█▊        | 13/73 [00:00<00:04, 13.21it/s]
Extracting : _libgcc_mutex-0.1-main.conda:  19%|█▉        | 14/73 [00:00<00:04, 13.21it/s]        
Extracting : libxml2-2.10.4-hf1b16e4_1.conda:  21%|██        | 15/73 [00:00<00:04, 13.21it/s]
Extracting : jsonpointer-2.1-pyhd3eb1b0_0.conda:  22%|██▏       | 16/73 [00:00<00:04, 13.21it/s]
Extracting : platformdirs-3.10.0-py312h06a4308_0.conda:  23%|██▎       | 17/73 [00:00<00:04, 13.21it/s]
Extracting : pycparser-2.21-pyhd3eb1b0_0.conda:  25%|██▍       | 18/73 [00:00<00:04, 13.21it/s]        
Extracting : yaml-cpp-0.8.0-h6a678d5_0.conda:  26%|██▌       | 19/73 [00:00<00:04, 13.21it/s]  
Extracting : openssl-3.0.13-h7f8727e_0.conda:  27%|██▋       | 20/73 [00:00<00:04, 13.21it/s]
Extracting : libstdcxx-ng-11.2.0-h1234567_1.conda:  29%|██▉       | 21/73 [00:00<00:03, 13.21it/s]
Extracting : certifi-2024.2.2-py312h06a4308_0.conda:  30%|███       | 22/73 [00:00<00:03, 13.21it/s]
Extracting : python-3.12.1-h996f2a0_0.conda:  32%|███▏      | 23/73 [00:01<00:03, 13.21it/s]        
Extracting : python-3.12.1-h996f2a0_0.conda:  33%|███▎      | 24/73 [00:01<00:02, 20.27it/s]
Extracting : xz-5.4.5-h5eee18b_0.conda:  33%|███▎      | 24/73 [00:01<00:02, 20.27it/s]     
Extracting : pybind11-abi-4-hd3eb1b0_1.conda:  34%|███▍      | 25/73 [00:01<00:02, 20.27it/s]
Extracting : idna-3.4-py312h06a4308_0.conda:  36%|███▌      | 26/73 [00:01<00:02, 20.27it/s] 
Extracting : setuptools-68.2.2-py312h06a4308_0.conda:  37%|███▋      | 27/73 [00:01<00:02, 20.27it/s]
Extracting : pluggy-1.0.0-py312h06a4308_1.conda:  38%|███▊      | 28/73 [00:01<00:02, 20.27it/s]     
Extracting : packaging-23.1-py312h06a4308_0.conda:  40%|███▉      | 29/73 [00:01<00:02, 20.27it/s]
Extracting : tk-8.6.12-h1ccaba5_0.conda:  41%|████      | 30/73 [00:01<00:02, 20.27it/s]          
Extracting : libmambapy-1.5.3-py312h2dafd23_0.conda:  42%|████▏     | 31/73 [00:01<00:02, 20.27it/s]
Extracting : libmamba-1.5.3-haf1ee3a_0.conda:  44%|████▍     | 32/73 [00:01<00:02, 20.27it/s]       
Extracting : libcurl-8.5.0-h251f7ec_0.conda:  45%|████▌     | 33/73 [00:01<00:01, 20.27it/s] 
Extracting : libedit-3.1.20230828-h5eee18b_0.conda:  47%|████▋     | 34/73 [00:01<00:01, 20.27it/s]
Extracting : wheel-0.41.2-py312h06a4308_0.conda:  48%|████▊     | 35/73 [00:01<00:01, 20.27it/s]   
Extracting : pycosat-0.6.6-py312h5eee18b_0.conda:  49%|████▉     | 36/73 [00:01<00:01, 20.27it/s]
Extracting : ld_impl_linux-64-2.38-h1181459_1.conda:  51%|█████     | 37/73 [00:01<00:01, 20.27it/s]
Extracting : libuuid-1.41.5-h5eee18b_0.conda:  52%|█████▏    | 38/73 [00:01<00:01, 20.27it/s]       
Extracting : distro-1.8.0-py312h06a4308_0.conda:  53%|█████▎    | 39/73 [00:01<00:01, 20.27it/s]
Extracting : conda-package-streaming-0.9.0-py312h06a4308_0.conda:  55%|█████▍    | 40/73 [00:01<00:01, 20.27it/s]
Extracting : libgcc-ng-11.2.0-h1234567_1.conda:  56%|█████▌    | 41/73 [00:01<00:01, 20.27it/s]                  
Extracting : zstandard-0.19.0-py312h5eee18b_0.conda:  58%|█████▊    | 42/73 [00:01<00:01, 20.27it/s]
Extracting : requests-2.31.0-py312h06a4308_1.conda:  59%|█████▉    | 43/73 [00:01<00:01, 20.27it/s] 
Extracting : cryptography-41.0.7-py312hdda0065_0.conda:  60%|██████    | 44/73 [00:01<00:01, 20.27it/s]
Extracting : zstd-1.5.5-hc292b87_0.conda:  62%|██████▏   | 45/73 [00:01<00:01, 20.27it/s]              
Extracting : fmt-9.1.0-hdb19cb5_0.conda:  63%|██████▎   | 46/73 [00:01<00:01, 20.27it/s] 
Extracting : tqdm-4.65.0-py312he106c6f_0.conda:  64%|██████▍   | 47/73 [00:01<00:01, 20.27it/s]
Extracting : libssh2-1.10.0-hdbd6064_2.conda:  66%|██████▌   | 48/73 [00:01<00:01, 20.27it/s]  
Extracting : pcre2-10.42-hebb0a14_0.conda:  67%|██████▋   | 49/73 [00:01<00:01, 20.27it/s]   
Extracting : lz4-c-1.9.4-h6a678d5_0.conda:  68%|██████▊   | 50/73 [00:01<00:01, 20.27it/s]
Extracting : libarchive-3.6.2-h6ac8c49_2.conda:  70%|██████▉   | 51/73 [00:01<00:01, 20.27it/s]
Extracting : urllib3-2.1.0-py312h06a4308_1.conda:  71%|███████   | 52/73 [00:01<00:01, 20.27it/s]
Extracting : sqlite-3.41.2-h5eee18b_0.conda:  73%|███████▎  | 53/73 [00:01<00:00, 20.27it/s]     
Extracting : conda-libmamba-solver-23.12.0-pyhd3eb1b0_1.conda:  74%|███████▍  | 54/73 [00:01<00:00, 20.27it/s]
Extracting : ca-certificates-2023.12.12-h06a4308_0.conda:  75%|███████▌  | 55/73 [00:01<00:00, 20.27it/s]     
Extracting : libffi-3.4.4-h6a678d5_0.conda:  77%|███████▋  | 56/73 [00:01<00:00, 20.27it/s]              
Extracting : jsonpatch-1.32-pyhd3eb1b0_0.conda:  78%|███████▊  | 57/73 [00:01<00:00, 20.27it/s]
Extracting : brotli-python-1.0.9-py312h6a678d5_7.conda:  79%|███████▉  | 58/73 [00:01<00:00, 20.27it/s]
Extracting : conda-content-trust-0.2.0-py312h06a4308_0.conda:  81%|████████  | 59/73 [00:01<00:00, 20.27it/s]
Extracting : menuinst-2.0.2-py312h06a4308_0.conda:  82%|████████▏ | 60/73 [00:01<00:00, 20.27it/s]           
Extracting : libev-4.33-h7f8727e_1.conda:  84%|████████▎ | 61/73 [00:01<00:00, 20.27it/s]         
Extracting : conda-24.1.2-py312h06a4308_0.conda:  85%|████████▍ | 62/73 [00:01<00:00, 20.27it/s]
Extracting : expat-2.5.0-h6a678d5_0.conda:  86%|████████▋ | 63/73 [00:01<00:00, 20.27it/s]      
Extracting : readline-8.2-h5eee18b_0.conda:  88%|████████▊ | 64/73 [00:01<00:00, 20.27it/s]
Extracting : reproc-14.2.4-h295c915_1.conda:  89%|████████▉ | 65/73 [00:01<00:00, 20.27it/s]
Extracting : zlib-1.2.13-h5eee18b_0.conda:  90%|█████████ | 66/73 [00:01<00:00, 20.27it/s]  
Extracting : cffi-1.16.0-py312h5eee18b_0.conda:  92%|█████████▏| 67/73 [00:01<00:00, 20.27it/s]
Extracting : _openmp_mutex-5.1-1_gnu.conda:  93%|█████████▎| 68/73 [00:01<00:00, 20.27it/s]    
Extracting : libnghttp2-1.57.0-h2d74bed_0.conda:  95%|█████████▍| 69/73 [00:01<00:00, 20.27it/s]
Extracting : krb5-1.20.1-h143b758_1.conda:  96%|█████████▌| 70/73 [00:01<00:00, 20.27it/s]      
Extracting : charset-normalizer-2.0.4-pyhd3eb1b0_0.conda:  97%|█████████▋| 71/73 [00:01<00:00, 20.27it/s]
Extracting : reproc-cpp-14.2.4-h295c915_1.conda:  99%|█████████▊| 72/73 [00:01<00:00, 20.27it/s]         
                                                                                                
Installing base environment...


Downloading and Extracting Packages: ...working... done

Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
+ /tmp/check-CRAN-incoming-hornik/data/r-miniconda/bin/conda update --yes --name base conda
Channels:
 - defaults
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/check-CRAN-incoming-hornik/data/r-miniconda

  added / updated specs:
    - conda


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    archspec-0.2.3             |     pyhd3eb1b0_0          47 KB
    ca-certificates-2024.3.11  |       h06a4308_0         127 KB
    conda-24.3.0               |  py312h06a4308_0         1.2 MB
    ------------------------------------------------------------
                                           Total:         1.4 MB

The following packages will be UPDATED:

  archspec                               0.2.1-pyhd3eb1b0_0 --> 0.2.3-pyhd3eb1b0_0 
  ca-certificates                     2023.12.12-h06a4308_0 --> 2024.3.11-h06a4308_0 
  conda                              24.1.2-py312h06a4308_0 --> 24.3.0-py312h06a4308_0 



Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
+ /tmp/check-CRAN-incoming-hornik/data/r-miniconda/bin/conda 'create' '--yes' '--name' 'r-reticulate' 'python=3.9' 'numpy' '--quiet' '-c' 'conda-forge'
Channels:
 - conda-forge
 - defaults
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/check-CRAN-incoming-hornik/data/r-miniconda/envs/r-reticulate

  added / updated specs:
    - numpy
    - python=3.9


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
    _openmp_mutex-4.5          |            2_gnu          23 KB  conda-forge
    bzip2-1.0.8                |       hd590300_5         248 KB  conda-forge
    ca-certificates-2024.2.2   |       hbcca054_0         152 KB  conda-forge
    ld_impl_linux-64-2.40      |       h41732ed_0         688 KB  conda-forge
    libblas-3.9.0              |22_linux64_openblas          14 KB  conda-forge
    libcblas-3.9.0             |22_linux64_openblas          14 KB  conda-forge
    libffi-3.4.2               |       h7f98852_5          57 KB  conda-forge
    libgcc-ng-13.2.0           |       h807b86a_5         752 KB  conda-forge
    libgfortran-ng-13.2.0      |       h69a702a_5          23 KB  conda-forge
    libgfortran5-13.2.0        |       ha4646dd_5         1.4 MB  conda-forge
    libgomp-13.2.0             |       h807b86a_5         410 KB  conda-forge
    liblapack-3.9.0            |22_linux64_openblas          14 KB  conda-forge
    libnsl-2.0.1               |       hd590300_0          33 KB  conda-forge
    libopenblas-0.3.27         |pthreads_h413a1c8_0         5.3 MB  conda-forge
    libsqlite-3.45.2           |       h2797004_0         837 KB  conda-forge
    libstdcxx-ng-13.2.0        |       h7e041cc_5         3.7 MB  conda-forge
    libuuid-2.38.1             |       h0b41bf4_0          33 KB  conda-forge
    libxcrypt-4.4.36           |       hd590300_1          98 KB  conda-forge
    libzlib-1.2.13             |       hd590300_5          60 KB  conda-forge
    ncurses-6.4.20240210       |       h59595ed_0         875 KB  conda-forge
    numpy-1.26.4               |   py39h474f0d3_0         6.7 MB  conda-forge
    openssl-3.2.1              |       hd590300_1         2.7 MB  conda-forge
    pip-24.0                   |     pyhd8ed1ab_0         1.3 MB  conda-forge
    python-3.9.19              |h0755675_0_cpython        22.7 MB  conda-forge
    python_abi-3.9             |           4_cp39           6 KB  conda-forge
    readline-8.2               |       h8228510_1         275 KB  conda-forge
    setuptools-69.2.0          |     pyhd8ed1ab_0         460 KB  conda-forge
    tk-8.6.13                  |noxft_h4845f30_101         3.2 MB  conda-forge
    tzdata-2024a               |       h0c530f3_0         117 KB  conda-forge
    wheel-0.43.0               |     pyhd8ed1ab_1          57 KB  conda-forge
    xz-5.2.6                   |       h166bdaf_0         409 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        52.5 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge 
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-64::bzip2-1.0.8-hd590300_5 
  ca-certificates    conda-forge/linux-64::ca-certificates-2024.2.2-hbcca054_0 
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0 
  libblas            conda-forge/linux-64::libblas-3.9.0-22_linux64_openblas 
  libcblas           conda-forge/linux-64::libcblas-3.9.0-22_linux64_openblas 
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 
  libgcc-ng          conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_5 
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_5 
  libgfortran5       conda-forge/linux-64::libgfortran5-13.2.0-ha4646dd_5 
  libgomp            conda-forge/linux-64::libgomp-13.2.0-h807b86a_5 
  liblapack          conda-forge/linux-64::liblapack-3.9.0-22_linux64_openblas 
  libnsl             conda-forge/linux-64::libnsl-2.0.1-hd590300_0 
  libopenblas        conda-forge/linux-64::libopenblas-0.3.27-pthreads_h413a1c8_0 
  libsqlite          conda-forge/linux-64::libsqlite-3.45.2-h2797004_0 
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_5 
  libuuid            conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 
  libxcrypt          conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1 
  libzlib            conda-forge/linux-64::libzlib-1.2.13-hd590300_5 
  ncurses            conda-forge/linux-64::ncurses-6.4.20240210-h59595ed_0 
  numpy              conda-forge/linux-64::numpy-1.26.4-py39h474f0d3_0 
  openssl            conda-forge/linux-64::openssl-3.2.1-hd590300_1 
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 
  python             conda-forge/linux-64::python-3.9.19-h0755675_0_cpython 
  python_abi         conda-forge/linux-64::python_abi-3.9-4_cp39 
  readline           conda-forge/linux-64::readline-8.2-h8228510_1 
  setuptools         conda-forge/noarch::setuptools-69.2.0-pyhd8ed1ab_0 
  tk                 conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 
  tzdata             conda-forge/noarch::tzdata-2024a-h0c530f3_0 
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 
  xz                 conda-forge/linux-64::xz-5.2.6-h166bdaf_0 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
* Miniconda has been successfully installed at "/tmp/check-CRAN-incoming-hornik/data/r-miniconda".
* DONE (pythonR)