* using log directory 'd:/RCompile/CRANincoming/R-devel/pwSEM.Rcheck'
* using R Under development (unstable) (2025-06-17 r88325 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'pwSEM/DESCRIPTION' ... OK
* this is package 'pwSEM' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Bill Shipley <Bill.Shipley@USherbrooke.ca>'

New submission

Possibly misspelled words in DESCRIPTION:
  dsep (7:25)

The Title field should be in title case. Current version is:
  'Piecewise structural equation modelling'
In title case that is:
  'Piecewise Structural Equation Modelling'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'pwSEM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for methods registered for non-generic:
pairs:
  function(x, ...)
pairs.without.edge.in.pwSEM:
  function(my.graph)

update:
  function(object, ...)
update.fun:
  function(sem.functions, i, all.grouping.vars, add.terms, data)
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] OK
* checking Rd files ... NOTE
checkRd: (-1) generalized.covariance.Rd:22: Lost braces; missing escapes or markup?
    22 | Shah, R.D. & Peters, J. (2020); i.e. Y1 \emph{|} Y2 |{C}, where C is a set of
       |                                                      ^
checkRd: (-1) perm.generalized.covariance.Rd:29: Lost braces; missing escapes or markup?
    29 | conditional of a common set of conditioning variables {C}; see
       |                                                       ^
checkRd: (-1) perm.generalized.covariance.Rd:31: Lost braces; missing escapes or markup?
    31 | i.e. Y1 \emph{|} Y2 |{C}. R1 and R2 are the response residuals
       |                      ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [33s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
                   user system elapsed
vanishing.tetrads 10.47   1.11   11.57
CI.algorithm       9.94   0.89   10.83
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [62s] OK
* checking PDF version of manual ... [12s] OK
* checking HTML version of manual ... OK
* DONE
Status: 4 NOTEs