* using log directory 'd:/RCompile/CRANincoming/R-devel/puremoe.Rcheck'
* using R version 4.4.0 alpha (2024-04-08 r86370 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'puremoe/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'puremoe' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Jason Timm <JaTimm@salud.unm.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  PubMed (7:54)
  Pubmed (3:8)
  REtrieval (3:23)
  bibliometrics (7:88)
  pubtations (7:103)

Package has a VignetteBuilder field but no prebuilt vignette index.

Found the following \keyword or \concept entries
which likely give several index terms:
  File 'dot-extract_basic.Rd':
    \keyword{pub_type,}
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'puremoe' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'README.Rmd'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.get_icites: no visible binding for global variable 'ref_count'
.get_icites: no visible global function definition for '.'
.get_icites: no visible binding for global variable 'from'
.get_icites: no visible binding for global variable 'doc_id'
.get_icites: no visible binding for global variable 'citation_net'
.get_pubtations: no visible binding for global variable 'locations'
.get_pubtations: no visible binding for global variable 'start'
.get_pubtations: no visible binding for global variable 'end'
.get_records: no visible binding for global variable 'id'
.get_records: no visible binding for global variable 'annotations'
data_pmc_list: no visible binding for global variable 'PMID'
data_pmc_list: no visible binding for global variable 'PMCID'
Undefined global functions or variables:
  . PMCID PMID annotations citation_net doc_id end from id locations
  ref_count start
Consider adding
  importFrom("stats", "end", "start")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [14s] OK
* checking HTML version of manual ... OK
* DONE
Status: 3 NOTEs