* installing *source* package ‘psqn’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.8 (11)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include/ -DPSQN_W_LAPACK -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include/ -DPSQN_W_LAPACK -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c r-api.cpp -o r-api.o In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:25: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/iterator:66: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/streambuf_iterator.h:35: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:43: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/ios_base.h:41: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/locale_classes.h:40: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/string:54: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/basic_string.h:39: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ext/alloc_traits.h:34: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/alloc_traits.h:33: /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:7: warning: destructor called on non-final 'r_worker_psqn' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 151 | __pointer->~_Tp(); | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:163:11: note: in instantiation of function template specialization 'std::_Destroy' requested here 163 | std::_Destroy(std::__addressof(*__first)); | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:196:2: note: in instantiation of function template specialization 'std::_Destroy_aux::__destroy' requested here 196 | __destroy(__first, __last); | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/alloc_traits.h:944:12: note: in instantiation of function template specialization 'std::_Destroy' requested here 944 | std::_Destroy(__first, __last); | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_vector.h:735:7: note: in instantiation of function template specialization 'std::_Destroy' requested here 735 | std::_Destroy(this->_M_impl._M_start, this->_M_impl._M_finish, | ^ r-api.cpp:404:30: note: in instantiation of member function 'std::vector::~vector' requested here 404 | std::vector funcs; | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:19: note: qualify call to silence this warning 151 | __pointer->~_Tp(); | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:7: warning: destructor called on non-final 'r_worker_optimizer_generic' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 151 | __pointer->~_Tp(); | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:163:11: note: in instantiation of function template specialization 'std::_Destroy' requested here 163 | std::_Destroy(std::__addressof(*__first)); | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:196:2: note: in instantiation of function template specialization 'std::_Destroy_aux::__destroy' requested here 196 | __destroy(__first, __last); | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/alloc_traits.h:944:12: note: in instantiation of function template specialization 'std::_Destroy' requested here 944 | std::_Destroy(__first, __last); | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_vector.h:735:7: note: in instantiation of function template specialization 'std::_Destroy' requested here 735 | std::_Destroy(this->_M_impl._M_start, this->_M_impl._M_finish, | ^ r-api.cpp:1284:43: note: in instantiation of member function 'std::vector::~vector' requested here 1284 | std::vector funcs; | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:19: note: qualify call to silence this warning 151 | __pointer->~_Tp(); | ^ 7 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include/ -DPSQN_W_LAPACK -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c test-intrapolate.cpp -o test-intrapolate.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include/ -DPSQN_W_LAPACK -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c test-lp.cpp -o test-lp.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include/ -DPSQN_W_LAPACK -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c test-richardson-extrapolation.cpp -o test-richardson-extrapolation.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include/ -DPSQN_W_LAPACK -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c test-runner.cpp -o test-runner.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o psqn.so RcppExports.o r-api.o test-intrapolate.o test-lp.o test-richardson-extrapolation.o test-runner.o -llapack -L/home/hornik/tmp/R-d-clang-18/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/psqn.Rcheck/00LOCK-psqn/00new/psqn/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (psqn)