* using log directory 'd:/RCompile/CRANincoming/R-devel/psc.Rcheck'
* using R Under development (unstable) (2024-10-13 r87228 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'psc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'psc' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [10s] NOTE
Maintainer: 'Richard Jackson <richJ23@liverpool.ac.uk>'

New submission

Possibly misspelled words in DESCRIPTION:
  CFM (11:28)
  Coutner (11:5)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'psc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'psc-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dataComb
> ### Title: A generic function for cleaning data ready for analysis
> ### Aliases: dataComb
> 
> ### ** Examples
> 
> library(psc)
> library(survival)
> data("surv.mod")
> data("data")
> dc <- dataComb(surv.mod,data)
Error in UseMethod("vcov") : 
  no applicable method for 'vcov' applied to an object of class "flexsurvreg"
Calls: dataComb ... dataComb.flexsurvreg -> modelExtract -> modelExtract.flexsurvreg -> vcov
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [129s] ERROR
Error(s) in re-building vignettes:
--- re-building 'psc-vignette.Rmd' using rmarkdown
* installing *source* package 'psc' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace 'flexsurv' is not available and has been replaced
by .GlobalEnv when processing object 'surv.mod'
Warning: namespace 'flexsurv' is not available and has been replaced
by .GlobalEnv when processing object 'surv.mod'
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (psc)

Quitting from lines 151-152 [unnamed-chunk-5] (psc-vignette.Rmd)
Error: processing vignette 'psc-vignette.Rmd' failed with diagnostics:
no applicable method for 'vcov' applied to an object of class "flexsurvreg"
--- failed re-building 'psc-vignette.Rmd'

SUMMARY: processing the following file failed:
  'psc-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [19s] WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! LaTeX Error: Unicode character ∼ (U+223C)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character β (U+03B2)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character π (U+03C0)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character π (U+03C0)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character π (U+03C0)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character β (U+03B2)
               not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unicode character μ (U+03BC)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character τ (U+03C4)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character π (U+03C0)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character β (U+03B2)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character Γ (U+0393)
               not set up for use with LaTeX.

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! LaTeX Error: Unicode character υ (U+03C5)
               not set up for use with LaTeX.

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! LaTeX Error: Unicode character υ (U+03C5)
               not set up for use with LaTeX.

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! LaTeX Error: Unicode character ϑ (U+03D1)
               not set up for use with LaTeX.

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! LaTeX Error: Unicode character │ (U+2502)
               not set up for use with LaTeX.

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! LaTeX Error: Unicode character β (U+03B2)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character τ (U+03C4)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ϑ (U+03D1)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character β (U+03B2)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character τ (U+03C4)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ς (U+03C2)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ω (U+03C9)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ϑ (U+03D1)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ϑ (U+03D1)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ω (U+03C9)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character ς (U+03C2)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character τ (U+03C4)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character β (U+03B2)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
! LaTeX Error: Unicode character τ (U+03C4)
               not set up for use with LaTeX.

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Type  H <return>  for immediate help.
* checking PDF version of manual without index ... ERROR
* checking HTML version of manual ... OK
* DONE
Status: 3 ERRORs, 1 WARNING, 1 NOTE