* using log directory ‘/srv/hornik/tmp/CRAN/psborrow2.Rcheck’
* using R Under development (unstable) (2024-03-31 r86238)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘psborrow2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘psborrow2’ version ‘0.0.3.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Matt Secrest <secrestm@gene.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  Viele (30:22)

Suggests or Enhances not in mainstream repositories:
  cmdstanr
Availability using Additional_repositories specification:
  cmdstanr   yes   https://mc-stan.org/r-packages/

Package has a VignetteBuilder field but no prebuilt vignette index.

The Description field contains
  installed from https://mc-stan.org/r-packages/.
Please enclose URLs in angle brackets (<...>).
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘cmdstanr’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘psborrow2’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/7s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘data_list.jpg’ ‘data_simulation.Rmd’ ‘dataset.Rmd’
  ‘figure-data_simulation-unnamed-chunk-6-1.png’
  ‘figure-dataset-mcmc-hist-1.png’ ‘figure-dataset-mcmc-trace-1.png’
  ‘figure-prior_distributions-unnamed-chunk-3-1.png’
  ‘figure-prior_distributions-unnamed-chunk-4-1.png’
  ‘figure-propensity_scores-balplot-1.png’
  ‘figure-propensity_scores-loveplot-1.png’
  ‘figure-propensity_scores-matchit_jitter-1.png’
  ‘figure-propensity_scores-plots-1.png’
  ‘figure-simulation_study-unnamed-chunk-23-1.png’
  ‘figure-simulation_study-unnamed-chunk-24-1.png’
  ‘figure-simulation_study-unnamed-chunk-25-1.png’
  ‘figure-weighting-exp_plot-1.png’
  ‘figure-weighting-logistic_plot-1.png’ ‘prior_distributions.Rmd’
  ‘propensity_scores.Rmd’ ‘psborrow2.Rmd’ ‘references.bib’
  ‘simulation_study.Rmd’ ‘weighting.Rmd’
* checking examples ... [8s/8s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [7s/7s] OK
  Running ‘testthat.R’ [7s/7s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... WARNING
Directory 'inst/doc' does not exist.
Package vignettes without corresponding single PDF/HTML:
  ‘data_simulation.Rmd’
  ‘dataset.Rmd’
  ‘prior_distributions.Rmd’
  ‘propensity_scores.Rmd’
  ‘psborrow2.Rmd’
  ‘simulation_study.Rmd’
  ‘weighting.Rmd’
* checking re-building of vignette outputs ... [5s/5s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs