* using log directory ‘/srv/hornik/tmp/CRAN/psBayesborrow.Rcheck’
* using R Under development (unstable) (2024-02-02 r85855)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘psBayesborrow/DESCRIPTION’ ... OK
* this is package ‘psBayesborrow’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Yusuke Yamaguchi <yamagubed@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  RCT (16:155)
  RCTs (16:224)
  confounders (16:407)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘psBayesborrow’ can be installed ... [520s/517s] OK
* used C++ compiler: ‘Debian clang version 17.0.6 (5)’
* checking C++ specification ... OK
  Not all R platforms support C++17
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS.md’:
No news entries found.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/3s] OK
* checking whether the package can be unloaded cleanly ... [4s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/3s] OK
* checking loading without being on the library search path ... [5s/5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/17s] NOTE
psborrow.summary: no visible binding for global variable ‘type’
psmatch : medps: no visible binding for global variable ‘X2’
Undefined global functions or variables:
  X2 type
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [14s/14s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [8s/8s] ERROR
  Running ‘testthat.R’ [8s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(psBayesborrow)
  > 
  > test_check("psBayesborrow")
  [ FAIL 1 | WARN 32 | SKIP 0 | PASS 4 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-psBayesborrow.R:77:3'): Check psBayesborrow simulation results ──
  `th2.sim` not identical to `th2.exp`.
  5/25 mismatches (average diff: 0.088)
  [21] -0.09 - -0.18 ==  0.09
  [22] -0.11 - -0.14 ==  0.03
  [23]  0.16 -  0.20 == -0.04
  [24] -0.31 - -0.54 ==  0.23
  [25]  0.17 -  0.12 ==  0.05
  
  [ FAIL 1 | WARN 32 | SKIP 0 | PASS 4 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 3 NOTEs