* using log directory ‘/srv/hornik/tmp/CRAN/proxyC.Rcheck’
* using R Under development (unstable) (2024-04-03 r86327)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘proxyC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘proxyC’ version ‘0.4.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] Note_to_CRAN_maintainers
Maintainer: ‘Kohei Watanabe <watanabe.kohei@gmail.com>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘proxyC’ can be installed ... [26s/26s] OK
* used C++ compiler: ‘Debian clang version 17.0.6 (5)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... WARNING
Found the following shell script(s) with CR or CRLF line endings:
  configure.ac
Non-Windows OSes require LF line endings.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [3s/3s] ERROR
  Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > require(proxyC)
  Loading required package: proxyC
  
  Attaching package: 'proxyC'
  
  The following object is masked from 'package:stats':
  
      dist
  
  > require(testthat)
  Loading required package: testthat
  > test_check("proxyC")
  [ FAIL 12 | WARN 0 | SKIP 0 | PASS 184 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-simil.R:26:5'): test cosine similarity ─────────────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─global test_simil(mat_test, "cosine", margin = 1, use_nan = TRUE) at test-simil.R:26:5
   2. │ ├─base::suppressWarnings(...)
   3. │ │ └─base::withCallingHandlers(...)
   4. │ ├─base::as.matrix(...)
   5. │ └─proxyC::simil(...)
   6. │   └─proxyC:::proxy(...)
   7. │     └─base::stop("proxyC.threads must be an integer")
   8. └─base::.handleSimpleError(...)
   9.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:32:5'): test correlation similarity ────────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─global test_simil(mat_test, "correlation", margin = 1, use_nan = TRUE) at test-simil.R:32:5
   2. │ ├─base::suppressWarnings(...)
   3. │ │ └─base::withCallingHandlers(...)
   4. │ ├─base::as.matrix(...)
   5. │ └─proxyC::simil(...)
   6. │   └─proxyC:::proxy(...)
   7. │     └─base::stop("proxyC.threads must be an integer")
   8. └─base::.handleSimpleError(...)
   9.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:39:5'): test jaccard similarity ────────────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─global test_simil(mat_test[-1, ], "jaccard", margin = 1) at test-simil.R:39:5
   2. │ ├─base::suppressWarnings(...)
   3. │ │ └─base::withCallingHandlers(...)
   4. │ ├─base::as.matrix(...)
   5. │ └─proxyC::simil(...)
   6. │   └─proxyC:::proxy(...)
   7. │     └─base::stop("proxyC.threads must be an integer")
   8. └─base::.handleSimpleError(...)
   9.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:46:5'): test ejaccard similarity ───────────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─global test_simil(mat_test[-1, ], "ejaccard", margin = 1) at test-simil.R:46:5
   2. │ ├─base::suppressWarnings(...)
   3. │ │ └─base::withCallingHandlers(...)
   4. │ ├─base::as.matrix(...)
   5. │ └─proxyC::simil(...)
   6. │   └─proxyC:::proxy(...)
   7. │     └─base::stop("proxyC.threads must be an integer")
   8. └─base::.handleSimpleError(...)
   9.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:55:5'): test fjaccard similarity ───────────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─base::as.matrix(simil(mat_prob, margin = 1, method = "fjaccard")) at test-simil.R:55:5
   2. ├─proxyC::simil(mat_prob, margin = 1, method = "fjaccard")
   3. │ └─proxyC:::proxy(...)
   4. │   └─base::stop("proxyC.threads must be an integer")
   5. └─base::.handleSimpleError(...)
   6.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:67:5'): test dice similarity ───────────────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─global test_simil(mat_test[1:3 * -1, ], "dice", margin = 1) at test-simil.R:67:5
   2. │ ├─base::suppressWarnings(...)
   3. │ │ └─base::withCallingHandlers(...)
   4. │ ├─base::as.matrix(...)
   5. │ └─proxyC::simil(...)
   6. │   └─proxyC:::proxy(...)
   7. │     └─base::stop("proxyC.threads must be an integer")
   8. └─base::.handleSimpleError(...)
   9.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:74:5'): test edice similarity ──────────────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─global test_simil(mat_test[1:3 * -1, ], "edice", margin = 1) at test-simil.R:74:5
   2. │ ├─base::suppressWarnings(...)
   3. │ │ └─base::withCallingHandlers(...)
   4. │ ├─base::as.matrix(...)
   5. │ └─proxyC::simil(...)
   6. │   └─proxyC:::proxy(...)
   7. │     └─base::stop("proxyC.threads must be an integer")
   8. └─base::.handleSimpleError(...)
   9.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:80:5'): test simple matching similarity ────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─global test_simil(mat_test, "simple matching", margin = 1) at test-simil.R:80:5
   2. │ ├─base::suppressWarnings(...)
   3. │ │ └─base::withCallingHandlers(...)
   4. │ ├─base::as.matrix(...)
   5. │ └─proxyC::simil(...)
   6. │   └─proxyC:::proxy(...)
   7. │     └─base::stop("proxyC.threads must be an integer")
   8. └─base::.handleSimpleError(...)
   9.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:86:5'): test hamanm similarity ─────────────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─global test_simil(mat_test, "hamman", margin = 1) at test-simil.R:86:5
   2. │ ├─base::suppressWarnings(...)
   3. │ │ └─base::withCallingHandlers(...)
   4. │ ├─base::as.matrix(...)
   5. │ └─proxyC::simil(...)
   6. │   └─proxyC:::proxy(...)
   7. │     └─base::stop("proxyC.threads must be an integer")
   8. └─base::.handleSimpleError(...)
   9.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:92:5'): test faith similarity ──────────────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─global test_simil(mat_test, "faith", margin = 1, ignore_upper = TRUE) at test-simil.R:92:5
   2. │ ├─base::suppressWarnings(...)
   3. │ │ └─base::withCallingHandlers(...)
   4. │ ├─base::as.matrix(...)
   5. │ └─proxyC::simil(...)
   6. │   └─proxyC:::proxy(...)
   7. │     └─base::stop("proxyC.threads must be an integer")
   8. └─base::.handleSimpleError(...)
   9.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-simil.R:104:5'): use_nan is working ────────────────────────────
  Error in `proxy(x, y, margin, method, min_proxy = min_simil, rank = rank, 
      drop0 = drop0, diag = diag, use_nan = use_nan, digits = digits)`: proxyC.threads must be an integer
  Backtrace:
      ▆
   1. ├─testthat::expect_warning(...) at test-simil.R:104:5
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat (local) .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. └─proxyC::simil(mat1, mat2, method = "correlation")
   7.   └─proxyC:::proxy(...)
  ── Error ('test-simil.R:170:5'): simil returns zero or NaN correctly ───────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': proxyC.threads must be an integer
  Backtrace:
       ▆
    1. ├─testthat::expect_equivalent(...) at test-simil.R:170:5
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─base::suppressWarnings(...)
    5. │ └─base::withCallingHandlers(...)
    6. ├─base::as.matrix(...)
    7. ├─proxyC::simil(mat, method = "cosine", margin = 1)
    8. │ └─proxyC:::proxy(...)
    9. │   └─base::stop("proxyC.threads must be an integer")
   10. └─base::.handleSimpleError(...)
   11.   └─base (local) h(simpleError(msg, call))
  
  [ FAIL 12 | WARN 0 | SKIP 0 | PASS 184 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s/1s] OK
* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING