* using log directory 'd:/RCompile/CRANincoming/R-devel/proteomicsr.Rcheck'
* using R Under development (unstable) (2023-11-29 r85646 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'proteomicsr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'proteomicsr' version '1.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Isabel Karkossa <isabel.karkossa@ufz.de>'

New submission

Possibly misspelled words in DESCRIPTION:
  Isoform (7:1557)
  LFQ (7:449)
  MSigDB (7:1125)
  Mahalanobis (7:615)
  PCAs (7:513)
  PTM (7:1477)
  PTMs (7:209)
  Proteome (7:1527)
  Proteomics (3:57)
  Qiagen (7:1261)
  SILAC (7:403)
  TMT (7:396)
  metabolomics (7:303)
  omics (7:291)
  phosphoproteomics (7:1607)
  proteomics (7:90)
  reproducibility (7:496)
  spectrometry (7:71)
  transcriptomics (7:320)
  translational (7:180)

Size of tarball: 6197966 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'proteomicsr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [15m] NOTE
Examples with CPU (user + system) or elapsed time > 10s
                                  user system elapsed
WGCNA_candidates_to_Cytoscape   179.17   2.57  181.81
WGCNA_similarity                161.10   2.23  163.38
WGCNA_network_creation           78.16   2.61   80.94
WGCNA_test_parameters            71.70   2.00   74.01
extract_summed_site_intensities  41.39   0.46   41.85
run_intensity_workflow           32.81   6.02   39.61
run_KinSwingR                    33.04   2.77  147.39
WGCNA_get_power                  15.55   2.56   18.19
run_FC_workflow                  12.53   5.33   19.02
get_results_enrichment           13.14   2.34   15.60
plot_volcano                      9.08   5.57   14.71
WGCNA_key_drivers                11.09   1.39   12.95
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [13m] OK
* checking PDF version of manual ... [14s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs