* installing *source* package ‘protViz’ ...
** using staged installation
** libs
using C compiler: ‘Debian clang version 17.0.5 (1)’
using C++ compiler: ‘Debian clang version 17.0.5 (1)’
clang-17  -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c protViz_init.c -o protViz_init.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c deisotoper.cpp -o deisotoper.o
In file included from deisotoper.cpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from deisotoper.cpp:1:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c aa2mass.cpp -o aa2mass.o
In file included from aa2mass.cpp:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from aa2mass.cpp:32:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c findNN_.cpp -o findNN_.o
In file included from findNN_.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from findNN_.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang-17  -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c computeFragmentIons.c -o computeFragmentIons.o
clang-17  -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c computeParentIonMass.c -o computeParentIonMass.o
clang-17  -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c findNN.c -o findNN.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fasta.cpp -o fasta.o
In file included from fasta.cpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   53 |         Rprintf("%.*s", num, s);
      |                  ~~^~   ~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat]
   57 |         REprintf("%.*s", num, s);
      |                   ~~^~   ~~~
In file included from fasta.cpp:10:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181:
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^~~~~~~~~
/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this
   30 |     Rf_warningcall(call, s.c_str());
      |                          ^
      |                          "%s", 
3 warnings generated.
clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o protViz.so protViz_init.o deisotoper.o aa2mass.o findNN_.o computeFragmentIons.o computeParentIonMass.o findNN.o RcppExports.o fasta.o -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/protViz.Rcheck/00LOCK-protViz/00new/protViz/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (protViz)