R Under development (unstable) (2025-11-10 r88994 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(promor)
> 
> test_check("promor")
0 empty row(s) removed.
2 empty column(s) removed.
1 protein(s) (rows) only identified by site removed.
4 protein(s) identified by 2 or fewer unique peptides removed.
Zeros have been replaced with NAs.
Data have been log-transformed.
4 proteins with higher than 33% NAs in at least one group removed.
0 empty row(s) removed.
4 empty column(s) removed.
10 protein contaminant(s) (rows) removed.
0 protein(s) identified by 2 or fewer unique peptides removed.
Zeros have been replaced with NAs.
Data have been log-transformed.
 b  c  b  c 
20 22 39 82 
 a  c  a  c 
11 22 83 82 
 a  b  a  b 
11 20 83 39 
change in estimate:  0.02415548 
change in estimate:  0.02101209 
change in estimate:  0.01821531 
change in estimate:  0.0157772 
change in estimate:  0.01367284 
change in estimate:  0.01186459 
change in estimate:  0.01031291 
change in estimate:  0.008980791 
1 siginificantly differentially expressed proteins found.

Testing glm...


Testing rf...


Testing svmRadial...


Done!
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
> 
> proc.time()
   user  system elapsed 
   6.73    0.56    7.28