downloading reverse dependencies ... downloading Certara.RsNLME.ModelExecutor_3.0.2.tar.gz ... ok downloading chromote_0.5.1.tar.gz ... ok downloading crew_1.3.0.tar.gz ... ok downloading DT_0.34.0.tar.gz ... ok downloading ellmer_0.3.2.tar.gz ... ok downloading FastRet_1.1.4.tar.gz ... ok downloading fiery_1.3.0.tar.gz ... ok downloading gwavr_0.3.2.tar.gz ... ok downloading httpuv_1.6.16.tar.gz ... ok downloading jobqueue_1.7.0.tar.gz ... ok downloading lavaangui_0.3.0.tar.gz ... ok downloading learnr_0.11.5.tar.gz ... ok downloading mcptools_0.1.1.tar.gz ... ok downloading netShiny_1.0.tar.gz ... ok downloading PacketLLM_0.1.1.tar.gz ... ok downloading plotly_4.11.0.tar.gz ... ok downloading plumber_1.3.0.tar.gz ... ok downloading plumber2_0.1.0.tar.gz ... ok downloading plumbertableau_0.1.1.tar.gz ... ok downloading ravepipeline_0.0.3.tar.gz ... ok downloading reqres_1.0.0.tar.gz ... ok downloading routr_1.0.0.tar.gz ... ok downloading shiny_1.11.1.tar.gz ... ok downloading shinychat_0.2.0.tar.gz ... ok downloading shinydashboard_0.7.3.tar.gz ... ok downloading shinyTree_0.3.1.tar.gz ... ok downloading tall_0.3.0.tar.gz ... ok downloading tapLock_0.2.0.tar.gz ... ok downloading TKCat_1.1.14.tar.gz ... ok downloading TreeSearch_1.7.0.tar.gz ... ok downloading webdeveloper_1.0.5.tar.gz ... ok downloading webshot2_0.1.2.tar.gz ... ok downloading aifeducation_1.1.2.tar.gz ... ok downloading ambiorix_2.2.1.tar.gz ... ok downloading chatLLM_0.1.3.tar.gz ... ok downloading condformat_0.10.1.tar.gz ... ok downloading coro_1.1.0.tar.gz ... ok downloading dipsaus_0.3.1.tar.gz ... ok downloading googlePubsubR_0.0.4.tar.gz ... ok downloading httr2_1.2.1.tar.gz ... ok downloading ipc_0.1.4.tar.gz ... ok downloading MVN_6.2.tar.gz ... ok downloading notionapi_0.1.0.tar.gz ... ok downloading pagedown_0.23.tar.gz ... ok downloading telegram.bot_3.0.1.tar.gz ... ok installing dependencies ‘autometric’, ‘BED’, ‘brotli’, ‘Certara.NLME8’, ‘Certara.RsNLME’, ‘ClickHouseHTTP’, ‘connectcreds’, ‘dipsaus’, ‘distill’, ‘fiery’, ‘filearray’, ‘firesafety’, ‘firesale’, ‘firestorm’, ‘ggVennDiagram’, ‘html5’, ‘ieegio’, ‘interprocess’, ‘iotarelr’, ‘ipc’, ‘languageserver’, ‘log’, ‘netgwas’, ‘nhdplusTools’, ‘otel’, ‘otelsdk’, ‘plotlyGeoAssets’, ‘promises’, ‘protoclust’, ‘Quartet’, ‘rapidoc’, ‘rcdk’, ‘RClickhouse’, ‘reactlog’, ‘ReDaMoR’, ‘redoc’, ‘redux’, ‘reqres’, ‘revealjs’, ‘Rogue’, ‘routr’, ‘rpymat’, ‘shidashi’, ‘shinychat’, ‘shinymeta’, ‘shinyscreenshot’, ‘sparkline’, ‘svglite’, ‘textrank’, ‘threeBrain’, ‘toscutil’, ‘tower’, ‘TreeDist’, ‘txtq’, ‘vembedr’, ‘watcher’, ‘whitebox’, ‘word2vec’ also installing the dependencies ‘pkgfilecache’, ‘pbdZMQ’, ‘rcdklibs’, ‘fingerprint’, ‘hydroloom’, ‘dataRetrieval’, ‘freesurferformats’, ‘readNSx’, ‘rpyANTs’, ‘IRkernel’, ‘neo2R’, ‘Ternary’ begin installing package ‘pkgfilecache’ begin installing package ‘pbdZMQ’ begin installing package ‘rcdklibs’ begin installing package ‘fingerprint’ begin installing package ‘hydroloom’ begin installing package ‘dataRetrieval’ begin installing package ‘readNSx’ begin installing package ‘neo2R’ begin installing package ‘otel’ begin installing package ‘vembedr’ begin installing package ‘Certara.NLME8’ begin installing package ‘autometric’ begin installing package ‘connectcreds’ begin installing package ‘languageserver’ begin installing package ‘toscutil’ begin installing package ‘whitebox’ begin installing package ‘interprocess’ begin installing package ‘ggVennDiagram’ begin installing package ‘netgwas’ begin installing package ‘plotlyGeoAssets’ begin installing package ‘redoc’ begin installing package ‘rapidoc’ begin installing package ‘firestorm’ begin installing package ‘filearray’ begin installing package ‘distill’ begin installing package ‘brotli’ begin installing package ‘reactlog’ begin installing package ‘watcher’ * installing *source* package ‘rapidoc’ ... ** this is package ‘rapidoc’ version ‘9.3.4’ ** package ‘rapidoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rapidoc) begin installing package ‘sparkline’ * installing *source* package ‘plotlyGeoAssets’ ... ** this is package ‘plotlyGeoAssets’ version ‘0.0.2’ ** package ‘plotlyGeoAssets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotlyGeoAssets) begin installing package ‘textrank’ * installing *source* package ‘redoc’ ... ** this is package ‘redoc’ version ‘2.0.0.75’ ** package ‘redoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redoc) begin installing package ‘word2vec’ * installing *source* package ‘reactlog’ ... ** this is package ‘reactlog’ version ‘1.1.1’ ** package ‘reactlog’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactlog) begin installing package ‘tower’ * installing *source* package ‘pkgfilecache’ ... ** this is package ‘pkgfilecache’ version ‘0.1.5’ ** package ‘pkgfilecache’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgfilecache) begin installing package ‘ClickHouseHTTP’ * installing *source* package ‘neo2R’ ... ** this is package ‘neo2R’ version ‘2.4.2’ ** package ‘neo2R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neo2R) begin installing package ‘RClickhouse’ * installing *source* package ‘autometric’ ... ** this is package ‘autometric’ version ‘0.1.2’ ** package ‘autometric’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLNupYs/R.INSTALL2dd76876d76094/autometric/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c autometric.c -o autometric.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c export.c -o export.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics.c -o metrics.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics_linux.c -o metrics_linux.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics_mac.c -o metrics_mac.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metrics_windows.c -o metrics_windows.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c thread.c -o thread.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c timers.c -o timers.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o autometric.so autometric.o export.o metrics.o metrics_linux.o metrics_mac.o metrics_windows.o thread.o timers.o -lpthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLNupYs/R.INSTALL2dd76876d76094/autometric/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-autometric/00new/autometric/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (autometric) begin installing package ‘protoclust’ * installing *source* package ‘toscutil’ ... ** this is package ‘toscutil’ version ‘2.8.0’ ** package ‘toscutil’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (toscutil) begin installing package ‘html5’ * installing *source* package ‘connectcreds’ ... ** this is package ‘connectcreds’ version ‘0.1.0’ ** package ‘connectcreds’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (connectcreds) begin installing package ‘iotarelr’ * installing *source* package ‘vembedr’ ... ** this is package ‘vembedr’ version ‘0.1.5’ ** package ‘vembedr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vembedr) begin installing package ‘log’ * installing *source* package ‘rcdklibs’ ... ** this is package ‘rcdklibs’ version ‘2.9’ ** package ‘rcdklibs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcdklibs) begin installing package ‘txtq’ * installing *source* package ‘firestorm’ ... ** this is package ‘firestorm’ version ‘0.1.0’ ** package ‘firestorm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (firestorm) begin installing package ‘redux’ * installing *source* package ‘tower’ ... ** this is package ‘tower’ version ‘0.2.0’ ** package ‘tower’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tower) begin installing package ‘revealjs’ * installing *source* package ‘otel’ ... ** this is package ‘otel’ version ‘0.2.0’ ** package ‘otel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (otel) begin installing package ‘svglite’ * installing *source* package ‘sparkline’ ... ** this is package ‘sparkline’ version ‘2.0’ ** package ‘sparkline’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparkline) begin installing package ‘freesurferformats’ * installing *source* package ‘textrank’ ... ** this is package ‘textrank’ version ‘0.3.1’ ** package ‘textrank’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (textrank) begin installing package ‘otelsdk’ * installing *source* package ‘fingerprint’ ... ** this is package ‘fingerprint’ version ‘3.5.7’ ** package ‘fingerprint’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4OjlaL/R.INSTALL2dd72f6aa7e3a5/fingerprint/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fpdistance.c -o fpdistance.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c readfps.c -o readfps.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fingerprint.so fpdistance.o readfps.o registerDynamicSymbol.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4OjlaL/R.INSTALL2dd72f6aa7e3a5/fingerprint/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fingerprint/00new/fingerprint/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘xor’ from package ‘base’ in package ‘fingerprint’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fingerprint) begin installing package ‘promises’ * installing *source* package ‘protoclust’ ... ** this is package ‘protoclust’ version ‘1.6.4’ ** package ‘protoclust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3UrRAm/R.INSTALL2de0534fa27252/protoclust/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hier.c -o hier.o hier.c: In function ‘hier’: hier.c:194:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 194 | for(j = 0; j < imerge; j++) | ^~~ hier.c:204:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 204 | ii = lt(imerge+1,imerge,n); | ^~ hier.c: In function ‘minimaxpoint’: hier.c:442:10: warning: ‘mm’ may be used uninitialized [-Wmaybe-uninitialized] 442 | return mm; | ^~ hier.c:428:7: note: ‘mm’ was declared here 428 | int mm; | ^~ hier.c: In function ‘findNN’: hier.c:346:29: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized] 346 | mincomplete = completelink(dmax, n, clusters[nn], nn, clusters[i], i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hier.c:328:7: note: ‘nn’ was declared here 328 | int nn; | ^~ hier.c: In function ‘hier’: hier.c:274:26: warning: ‘imerge’ may be used uninitialized [-Wmaybe-uninitialized] 274 | Cluster *cur = clusters[imerge]; | ^ hier.c:28:20: note: ‘imerge’ was declared here 28 | int i, j, k, ii, imerge, jmerge, reverse; | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c protoclust_init.c -o protoclust_init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o protoclust.so hier.o protoclust_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3UrRAm/R.INSTALL2de0534fa27252/protoclust/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-protoclust/00new/protoclust/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (protoclust) begin installing package ‘rcdk’ * installing *source* package ‘pbdZMQ’ ... ** this is package ‘pbdZMQ’ version ‘0.3-14’ ** package ‘pbdZMQ’ successfully unpacked and MD5 sums checked ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.25... yes checking for zmq... yes checking for zmq_4_1_6... checking for zmq... yes ****************** Results of pbdZMQ package configure ***************** >> GET_PKG_CONFIG = yes >> GET_SYSTEM_ZMQ = yes >> GET_SYSTEM_ZMQ_430 = yes >> PKG_CONFIG = /usr/bin/pkg-config >> SYSTEM_ZMQ_INCLUDEDIR = /usr/include >> SYSTEM_ZMQ_LIBDIR = /usr/lib/x86_64-linux-gnu >> ENABLE_INTERNAL_ZMQ = no >> INTERNAL_ZMQ_INCLUDEDIR = ./zmqsrc/include >> INTERNAL_ZMQ_LIBDIR = ./ >> EXTERNAL_ZMQ_INCLUDE = >> EXTERNAL_ZMQ_LDFLAGS = >> ZMQ_INCLUDE = -I/usr/include >> ZMQ_LDFLAGS = -L/usr/lib/x86_64-linux-gnu -lzmq >> EXT_LIBS = >> ZMQ_POLLER = select ************************************************************************ configure: creating ./config.status config.status: creating src/Makevars configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq config.status: creating R/zzz.r ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphoKr6v/R.INSTALL2dd7236044cb1/pbdZMQ/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_context.c -o R_zmq_context.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_socket.c -o R_zmq_socket.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_sendrecv.c -o R_zmq_sendrecv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_utility.c -o R_zmq_utility.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_message.c -o R_zmq_message.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_transfer.c -o R_zmq_transfer.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c shellexec_wcc.c -o shellexec_wcc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_poll.c -o R_zmq_poll.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -pedantic -mtune=native -c R_cxx_dummy.cc -o R_cxx_dummy.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o pbdZMQ.so R_zmq_context.o R_zmq_socket.o R_zmq_sendrecv.o R_zmq_utility.o R_zmq_message.o R_zmq_transfer.o shellexec_wcc.o R_zmq_poll.o R_cxx_dummy.o zzz.o -L/usr/lib/x86_64-linux-gnu -lzmq -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphoKr6v/R.INSTALL2dd7236044cb1/pbdZMQ/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pbdZMQ/00new/pbdZMQ ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbdZMQ) begin installing package ‘IRkernel’ * installing *source* package ‘txtq’ ... ** this is package ‘txtq’ version ‘0.2.4’ ** package ‘txtq’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (txtq) * installing *source* package ‘distill’ ... ** this is package ‘distill’ version ‘1.6’ ** package ‘distill’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distill) * installing *source* package ‘html5’ ... ** this is package ‘html5’ version ‘1.0.2’ ** package ‘html5’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (html5) * installing *source* package ‘revealjs’ ... ** this is package ‘revealjs’ version ‘0.10.0’ ** package ‘revealjs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (revealjs) * installing *source* package ‘log’ ... ** this is package ‘log’ version ‘1.1.1’ ** package ‘log’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (log) * installing *source* package ‘ggVennDiagram’ ... ** this is package ‘ggVennDiagram’ version ‘1.5.4’ ** package ‘ggVennDiagram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggVennDiagram) * installing *source* package ‘ClickHouseHTTP’ ... ** this is package ‘ClickHouseHTTP’ version ‘0.3.4’ ** package ‘ClickHouseHTTP’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ClickHouseHTTP) * installing *source* package ‘dataRetrieval’ ... ** this is package ‘dataRetrieval’ version ‘2.7.21’ ** package ‘dataRetrieval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dataRetrieval) * installing *source* package ‘Certara.NLME8’ ... ** this is package ‘Certara.NLME8’ version ‘3.0.2’ ** package ‘Certara.NLME8’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Certara.NLME8) begin installing package ‘Certara.RsNLME’ * installing *source* package ‘redux’ ... ** this is package ‘redux’ version ‘1.1.5’ ** package ‘redux’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis Using PKG_LIBS=-lhiredis ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpF6FATU/R.INSTALL2de17b1e70f441/redux/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connection.c -o connection.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c conversions.c -o conversions.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registration.c -o registration.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c subscribe.c -o subscribe.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o redux.so connection.o conversions.o registration.o subscribe.o -lhiredis -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpF6FATU/R.INSTALL2de17b1e70f441/redux/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-redux/00new/redux/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redux) * installing *source* package ‘hydroloom’ ... ** this is package ‘hydroloom’ version ‘1.1.1’ ** package ‘hydroloom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hydroloom) begin installing package ‘nhdplusTools’ * installing *source* package ‘netgwas’ ... ** this is package ‘netgwas’ version ‘1.14.3’ ** package ‘netgwas’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (netgwas) * installing *source* package ‘IRkernel’ ... ** this is package ‘IRkernel’ version ‘1.3.2’ ** package ‘IRkernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRkernel) begin installing package ‘rpymat’ * installing *source* package ‘promises’ ... ** this is package ‘promises’ version ‘1.4.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) begin installing package ‘Ternary’ begin installing package ‘shinymeta’ begin installing package ‘shinyscreenshot’ begin installing package ‘dipsaus’ begin installing package ‘shidashi’ begin installing package ‘ReDaMoR’ begin installing package ‘TreeDist’ begin installing package ‘ipc’ begin installing package ‘BED’ begin installing package ‘shinychat’ * installing *source* package ‘rcdk’ ... ** this is package ‘rcdk’ version ‘3.8.1’ ** package ‘rcdk’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcdk) * installing *source* package ‘shinyscreenshot’ ... ** this is package ‘shinyscreenshot’ version ‘0.2.1’ ** package ‘shinyscreenshot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyscreenshot) * installing *source* package ‘shinymeta’ ... ** this is package ‘shinymeta’ version ‘0.2.1’ ** package ‘shinymeta’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinymeta) * installing *source* package ‘shinychat’ ... ** this is package ‘shinychat’ version ‘0.2.0’ ** package ‘shinychat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinychat) * installing *source* package ‘shidashi’ ... ** this is package ‘shidashi’ version ‘0.1.6’ ** package ‘shidashi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shidashi) * installing *source* package ‘rpymat’ ... ** this is package ‘rpymat’ version ‘0.1.8’ ** package ‘rpymat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpymat) begin installing package ‘rpyANTs’ * installing *source* package ‘readNSx’ ... ** this is package ‘readNSx’ version ‘0.0.5’ ** package ‘readNSx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpj8OAy3/R.INSTALL2dd7352a6bfadb/readNSx/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rawToSEXP.cpp -o rawToSEXP.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c readBCI2R.cpp -o readBCI2R.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c readNSxDataPacket.cpp -o readNSxDataPacket.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o readNSx.so cpp11.o rawToSEXP.o readBCI2R.o readNSxDataPacket.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpj8OAy3/R.INSTALL2dd7352a6bfadb/readNSx/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-readNSx/00new/readNSx/libs ** R ** inst ** byte-compile and prepare package for lazy loading R6Class LazyH5Internal: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readNSx) * installing *source* package ‘freesurferformats’ ... ** this is package ‘freesurferformats’ version ‘1.0.0’ ** package ‘freesurferformats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freesurferformats) * installing *source* package ‘Ternary’ ... ** this is package ‘Ternary’ version ‘2.3.5’ ** package ‘Ternary’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Ternary) begin installing package ‘Quartet’ * installing *source* package ‘interprocess’ ... ** this is package ‘interprocess’ version ‘1.3.0’ ** package ‘interprocess’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNWW1PQ/R.INSTALL2dd77968ececdf/interprocess/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c msg_queue.cpp -o msg_queue.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/iterator/iterator_categories.hpp:16, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/iterator/iterator_facade.hpp:13, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/range/iterator_range_core.hpp:27, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/algorithm/string/replace.hpp:16, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/date_facet.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/gregorian/gregorian_io.hpp:16, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/gregorian/gregorian.hpp:31, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/time_formatters.hpp:12, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/posix_time.hpp:24, from msg_queue.cpp:3: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/time_clock.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/time_formatters.hpp:16: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 326 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include/cpp11/as.hpp:5, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include/cpp11.hpp:5, from msg_queue.cpp:1: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mutex.cpp -o mutex.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/iterator/iterator_categories.hpp:16, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/iterator/iterator_facade.hpp:13, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/range/iterator_range_core.hpp:27, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/algorithm/string/replace.hpp:16, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/date_facet.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/gregorian/gregorian_io.hpp:16, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/gregorian/gregorian.hpp:31, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/time_formatters.hpp:12, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/posix_time.hpp:24, from mutex.cpp:3: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/time_clock.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/time_formatters.hpp:16: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 326 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include/cpp11/as.hpp:5, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include/cpp11.hpp:5, from mutex.cpp:1: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c semaphore.cpp -o semaphore.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/placeholders.hpp:24, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/iterator/iterator_categories.hpp:16, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/iterator/iterator_facade.hpp:13, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/range/iterator_range_core.hpp:27, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/algorithm/string/replace.hpp:16, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/date_facet.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/gregorian/gregorian_io.hpp:16, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/gregorian/gregorian.hpp:31, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/time_formatters.hpp:12, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/posix_time.hpp:24, from semaphore.cpp:3: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/time_clock.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/date_time/posix_time/time_formatters.hpp:16: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 326 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include/cpp11/as.hpp:5, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include/cpp11.hpp:5, from semaphore.cpp:1: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c uid.cpp -o uid.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o interprocess.so cpp11.o msg_queue.o mutex.o semaphore.o uid.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNWW1PQ/R.INSTALL2dd77968ececdf/interprocess/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-interprocess/00new/interprocess/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (interprocess) * installing *source* package ‘svglite’ ... ** this is package ‘svglite’ version ‘2.2.2’ ** package ‘svglite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdRrXFe/R.INSTALL2de1b37c3232eb/svglite/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/systemfonts/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/textshaping/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SvgStream.cpp -o SvgStream.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/systemfonts/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/textshaping/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/systemfonts/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/textshaping/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c devSVG.cpp -o devSVG.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o svglite.so SvgStream.o cpp11.o devSVG.o -lpng -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdRrXFe/R.INSTALL2de1b37c3232eb/svglite/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-svglite/00new/svglite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (svglite) * installing *source* package ‘languageserver’ ... ** this is package ‘languageserver’ version ‘0.3.16’ ** package ‘languageserver’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuV11m9/R.INSTALL2dd75e5e72fe85/languageserver/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fsm.c -o fsm.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c languageserver.c -o languageserver.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reader.c -o reader.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c search.c -o search.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stack.c -o stack.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o languageserver.so fsm.o languageserver.o reader.o search.o stack.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuV11m9/R.INSTALL2dd75e5e72fe85/languageserver/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-languageserver/00new/languageserver/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (languageserver) * installing *source* package ‘ipc’ ... ** this is package ‘ipc’ version ‘0.1.4’ ** package ‘ipc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading R6Class Consumer: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. R6Class RedisSource: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ipc) * installing *source* package ‘BED’ ... ** this is package ‘BED’ version ‘1.6.2’ ** package ‘BED’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDCbeoJ/R.INSTALL2de8741ada0926/BED/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extract_u_de.c -o extract_u_de.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extract_u_gn.c -o extract_u_gn.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BED.so extract_u_de.o extract_u_gn.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDCbeoJ/R.INSTALL2de8741ada0926/BED/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BED/00new/BED/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BED) * installing *source* package ‘whitebox’ ... ** this is package ‘whitebox’ version ‘2.4.3’ ** package ‘whitebox’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (whitebox) * installing *source* package ‘nhdplusTools’ ... ** this is package ‘nhdplusTools’ version ‘1.3.2’ ** package ‘nhdplusTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nhdplusTools) * installing *source* package ‘iotarelr’ ... ** this is package ‘iotarelr’ version ‘0.1.6’ ** package ‘iotarelr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpozuVn7/R.INSTALL2de095550d15a0/iotarelr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c estimation.cpp -o estimation.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o iotarelr.so RcppExports.o estimation.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpozuVn7/R.INSTALL2de095550d15a0/iotarelr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-iotarelr/00new/iotarelr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iotarelr) * installing *source* package ‘rpyANTs’ ... ** this is package ‘rpyANTs’ version ‘0.0.5’ ** package ‘rpyANTs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpyANTs) * installing *source* package ‘ReDaMoR’ ... ** this is package ‘ReDaMoR’ version ‘0.8.2’ ** package ‘ReDaMoR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ReDaMoR) * installing *source* package ‘Certara.RsNLME’ ... ** this is package ‘Certara.RsNLME’ version ‘3.1.0.1’ ** package ‘Certara.RsNLME’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Certara.RsNLME) * installing *source* package ‘brotli’ ... ** this is package ‘brotli’ version ‘1.3.2’ ** package ‘brotli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprkQuVK/R.INSTALL2dd78f4fc1c9fc/brotli/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrapper.c -o wrapper.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/backward_references.c -o enc/backward_references.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/bit_cost.c -o enc/bit_cost.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/block_splitter.c -o enc/block_splitter.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/brotli_bit_stream.c -o enc/brotli_bit_stream.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/cluster.c -o enc/cluster.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/compress_fragment_two_pass.c -o enc/compress_fragment_two_pass.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/compress_fragment.c -o enc/compress_fragment.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/encode.c -o enc/encode.o enc/encode.c:1473:20: warning: argument 5 of type ‘const uint8_t *’ {aka ‘const unsigned char *’} declared as a pointer [-Wvla-parameter] 1473 | const uint8_t* input_buffer, size_t* encoded_size, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from enc/encode.c:9: include/brotli/encode.h:314:19: note: previously declared as a variable length array ‘const uint8_t[input_size]’ {aka ‘const unsigned char[input_size]’} 314 | const uint8_t input_buffer[BROTLI_ARRAY_PARAM(input_size)], | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ enc/encode.c:1474:14: warning: argument 7 of type ‘uint8_t *’ {aka ‘unsigned char *’} declared as a pointer [-Wvla-parameter] 1474 | uint8_t* encoded_buffer) { | ~~~~~~~~~^~~~~~~~~~~~~~ include/brotli/encode.h:316:13: note: previously declared as a variable length array ‘uint8_t[*encoded_size]’ {aka ‘unsigned char[*encoded_size]’} 316 | uint8_t encoded_buffer[BROTLI_ARRAY_PARAM(*encoded_size)]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/entropy_encode.c -o enc/entropy_encode.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/histogram.c -o enc/histogram.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/literal_cost.c -o enc/literal_cost.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/memory.c -o enc/memory.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/metablock.c -o enc/metablock.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/static_dict.c -o enc/static_dict.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/utf8_util.c -o enc/utf8_util.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/bit_reader.c -o dec/bit_reader.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/huffman.c -o dec/huffman.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/state.c -o dec/state.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/decode.c -o dec/decode.o dec/decode.c:2036:41: warning: argument 2 of type ‘const uint8_t *’ {aka ‘const unsigned char *’} declared as a pointer [-Wvla-parameter] 2036 | size_t encoded_size, const uint8_t* encoded_buffer, size_t* decoded_size, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from dec/decode.c:7: include/brotli/decode.h:204:19: note: previously declared as a variable length array ‘const uint8_t[encoded_size]’ {aka ‘const unsigned char[encoded_size]’} 204 | const uint8_t encoded_buffer[BROTLI_ARRAY_PARAM(encoded_size)], | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dec/decode.c:2037:14: warning: argument 4 of type ‘uint8_t *’ {aka ‘unsigned char *’} declared as a pointer [-Wvla-parameter] 2037 | uint8_t* decoded_buffer) { | ~~~~~~~~~^~~~~~~~~~~~~~ include/brotli/decode.h:206:13: note: previously declared as a variable length array ‘uint8_t[*decoded_size]’ {aka ‘unsigned char[*decoded_size]’} 206 | uint8_t decoded_buffer[BROTLI_ARRAY_PARAM(*decoded_size)]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/dictionary.c -o common/dictionary.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/backward_references_hq.c -o enc/backward_references_hq.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/dictionary_hash.c -o enc/dictionary_hash.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/transform.c -o common/transform.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/encoder_dict.c -o enc/encoder_dict.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/platform.c -o common/platform.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/context.c -o common/context.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/constants.c -o common/constants.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/command.c -o enc/command.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/fast_log.c -o enc/fast_log.o ar rcs enc/libstatbrotli.a enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o brotli.so wrapper.o -Lenc -lstatbrotli -L/home/hornik/tmp/R/lib -lR gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tools/brotli.c -o tools/brotli.o mkdir -p ../inst/bin g++-15 -std=gnu++17 -o ../inst/bin/bro tools/brotli.o -Lenc -lstatbrotli -Wl,-O1 rm -f enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o ../inst/bin/bro enc/libstatbrotli.a tools/brotli.o make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprkQuVK/R.INSTALL2dd78f4fc1c9fc/brotli/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-brotli/00new/brotli/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brotli) begin installing package ‘reqres’ * installing *source* package ‘reqres’ ... ** this is package ‘reqres’ version ‘1.0.0’ ** package ‘reqres’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6CPwi1/R.INSTALL2dedb742bb11d3/reqres/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reqres.c -o reqres.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o reqres.so reqres.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6CPwi1/R.INSTALL2dedb742bb11d3/reqres/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-reqres/00new/reqres/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reqres) begin installing package ‘fiery’ begin installing package ‘firesale’ begin installing package ‘routr’ * installing *source* package ‘watcher’ ... ** this is package ‘watcher’ version ‘0.1.4’ ** package ‘watcher’ successfully unpacked and MD5 sums checked ** using staged installation Compiling 'libfswatch' from source... Detecting 'cmake'... /usr/bin/cmake -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-15 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-15 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Gettext: /usr/bin/msgmerge (found version "0.23.1") -- Found Intl: built in to C library -- Looking for C++ include getopt.h -- Looking for C++ include getopt.h - found -- Looking for getopt_long -- Looking for getopt_long - found -- Performing Test HAVE_STRUCT_STAT_ST_MTIME -- Performing Test HAVE_STRUCT_STAT_ST_MTIME - Success -- Performing Test HAVE_STRUCT_STAT_ST_MTIMESPEC -- Performing Test HAVE_STRUCT_STAT_ST_MTIMESPEC - Failed -- Looking for C++ include sys/inotify.h -- Looking for C++ include sys/inotify.h - found -- Looking for C++ include sys/event.h -- Looking for C++ include sys/event.h - not found -- Looking for C++ include port.h -- Looking for C++ include port.h - not found -- Looking for FindFirstChangeNotification -- Looking for FindFirstChangeNotification - not found -- Configuring done (1.6s) -- Generating done (0.0s) -- Build files have been written to: /home/hornik/tmp/scratch/RtmpFoKAsy/R.INSTALL2dd78be6c9e8b/watcher/fswatch-5c443d2 gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFoKAsy/R.INSTALL2dd78be6c9e8b/watcher/fswatch-5c443d2' [ 7%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c/cevent.cpp.o [ 15%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c/libfswatch.cpp.o [ 23%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c/libfswatch_log.cpp.o [ 30%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/event.cpp.o [ 38%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/filter.cpp.o [ 46%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/libfswatch_exception.cpp.o [ 53%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/monitor.cpp.o [ 61%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/monitor_factory.cpp.o [ 69%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/path_utils.cpp.o [ 76%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/poll_monitor.cpp.o [ 84%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/string/string_utils.cpp.o [ 92%] Building CXX object libfswatch/CMakeFiles/libfswatch.dir/src/libfswatch/c++/inotify_monitor.cpp.o [100%] Linking CXX static library libfswatch.b [100%] Built target libfswatch Install the project... -- Install configuration: "Release" gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFoKAsy/R.INSTALL2dd78be6c9e8b/watcher/fswatch-5c443d2' ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFoKAsy/R.INSTALL2dd78be6c9e8b/watcher/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c link.cpp -o link.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c watcher.c -o watcher.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o watcher.so init.o link.o watcher.o ../install/lib/libfswatch.b -lpthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFoKAsy/R.INSTALL2dd78be6c9e8b/watcher/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-watcher/00new/watcher/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (watcher) * installing *source* package ‘word2vec’ ... ** this is package ‘word2vec’ version ‘0.4.0’ ** package ‘word2vec’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpf8Tokq/R.INSTALL2dde7f72b77336/word2vec/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I./word2vec/include -I./word2vec/lib -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c word2vec/lib/huffmanTree.cpp -o word2vec/lib/huffmanTree.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I./word2vec/include -I./word2vec/lib -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c word2vec/lib/mapper.cpp -o word2vec/lib/mapper.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I./word2vec/include -I./word2vec/lib -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c word2vec/lib/nsDistribution.cpp -o word2vec/lib/nsDistribution.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I./word2vec/include -I./word2vec/lib -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c word2vec/lib/trainer.cpp -o word2vec/lib/trainer.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I./word2vec/include -I./word2vec/lib -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c word2vec/lib/trainThread.cpp -o word2vec/lib/trainThread.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I./word2vec/include -I./word2vec/lib -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c word2vec/lib/vocabulary.cpp -o word2vec/lib/vocabulary.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I./word2vec/include -I./word2vec/lib -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c word2vec/lib/word2vec.cpp -o word2vec/lib/word2vec.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I./word2vec/include -I./word2vec/lib -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_word2vec.cpp -o rcpp_word2vec.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I./word2vec/include -I./word2vec/lib -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o word2vec.so word2vec/lib/huffmanTree.o word2vec/lib/mapper.o word2vec/lib/nsDistribution.o word2vec/lib/trainer.o word2vec/lib/trainThread.o word2vec/lib/vocabulary.o word2vec/lib/word2vec.o rcpp_word2vec.o RcppExports.o -pthread -L/home/hornik/tmp/R/lib -lR rm -f word2vec/lib/huffmanTree.o word2vec/lib/mapper.o word2vec/lib/nsDistribution.o word2vec/lib/trainer.o word2vec/lib/trainThread.o word2vec/lib/vocabulary.o word2vec/lib/word2vec.o rcpp_word2vec.o RcppExports.o make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpf8Tokq/R.INSTALL2dde7f72b77336/word2vec/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-word2vec/00new/word2vec/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (word2vec) * installing *source* package ‘firesale’ ... ** this is package ‘firesale’ version ‘0.1.0’ ** package ‘firesale’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (firesale) * installing *source* package ‘routr’ ... ** this is package ‘routr’ version ‘1.0.0’ ** package ‘routr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (routr) begin installing package ‘firesafety’ * installing *source* package ‘fiery’ ... ** this is package ‘fiery’ version ‘1.3.0’ ** package ‘fiery’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fiery) * installing *source* package ‘dipsaus’ ... ** this is package ‘dipsaus’ version ‘0.3.1’ ** package ‘dipsaus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0ivA1R/R.INSTALL2de86a488c0467/dipsaus/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c forelse.cpp -o forelse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_arrayShift.cpp -o rcpp_arrayShift.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_baselineArray.cpp -o rcpp_baselineArray.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_collapse.cpp -o rcpp_collapse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_fastCov.cpp -o rcpp_fastCov.o rcpp_fastCov.cpp: In member function ‘virtual void FastCov::operator()(std::size_t, std::size_t)’: rcpp_fastCov.cpp:47:24: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 47 | for(jj = begin; jj < end; jj++, pt_cm2++){ | ~~~^~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_median.cpp -o rcpp_median.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dipsaus.so RcppExports.o forelse.o rcpp_arrayShift.o rcpp_baselineArray.o rcpp_collapse.o rcpp_fastCov.o rcpp_median.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0ivA1R/R.INSTALL2de86a488c0467/dipsaus/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dipsaus/00new/dipsaus/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dipsaus) begin installing package ‘threeBrain’ * installing *source* package ‘firesafety’ ... ** this is package ‘firesafety’ version ‘0.1.0’ ** package ‘firesafety’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (firesafety) * installing *source* package ‘filearray’ ... ** this is package ‘filearray’ version ‘0.2.0’ ** package ‘filearray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvbO1Pj/R.INSTALL2dd78722dc5486/filearray/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c collapse.cpp -o collapse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c conversion.cpp -o conversion.o conversion.cpp: In function ‘SEXPREC* convert_as2(SEXP, SEXP, SEXPTYPE)’: conversion.cpp:293:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘SEXPTYPE’ {aka ‘unsigned int’} [-Wsign-compare] 293 | if( TYPEOF(y) != type ){ | ~~~~~~~~~~^~~~~~~ conversion.cpp: In function ‘void realToFloat(double*, float*, size_t)’: conversion.cpp:405:29: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 405 | for(R_xlen_t ii = 0; ii < nelem; ii++, x++, y++){ | ~~~^~~~~~~ conversion.cpp: In function ‘void floatToReal(float*, double*, size_t)’: conversion.cpp:415:29: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 415 | for(R_xlen_t ii = 0; ii < nelem; ii++, y++, x++){ | ~~~^~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c core.cpp -o core.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interfaces.cpp -o interfaces.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c load.cpp -o load.o load.cpp: In function ‘SEXPREC* FARR_subset_sequential(const std::string&, const int64_t&, SEXP, SEXPTYPE, SEXP, int64_t, int64_t)’: load.cpp:66:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘SEXPTYPE’ {aka ‘unsigned int’} [-Wsign-compare] 66 | if( TYPEOF(ret) != array_memory_sxptype(array_type) ){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c map.cpp -o map.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mapreduce.cpp -o mapreduce.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c save.cpp -o save.o save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = unsigned char; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = float; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = double; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = int; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c serialize.cpp -o serialize.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c threadSettings.cpp -o threadSettings.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o utils.cpp: In function ‘void set_buffer(SEXP, int, size_t, int)’: utils.cpp:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 42 | if( buf_bytes > buffer_bytes ){ | ~~~~~~~~~~^~~~~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o filearray.so RcppExports.o collapse.o conversion.o core.o interfaces.o load.o map.o mapreduce.o save.o serialize.o threadSettings.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvbO1Pj/R.INSTALL2dd78722dc5486/filearray/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-filearray/00new/filearray/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filearray) begin installing package ‘ieegio’ * installing *source* package ‘TreeDist’ ... ** this is package ‘TreeDist’ version ‘2.11.1’ ** package ‘TreeDist’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcL0wiL/R.INSTALL2de86f2953ec76/TreeDist/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c day_1985.cpp -o day_1985.o In file included from tree_distances.h:4, from day_1985.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include/TreeTools/SplitList.h:33:16: warning: ‘TreeTools::bitcounts’ defined but not used [-Wunused-variable] 33 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hmi.cpp -o hmi.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hpart.cpp -o hpart.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hpart_relabel.cpp -o hpart_relabel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lap.cpp -o lap.o In file included from tree_distances.h:4, from lap.cpp:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include/TreeTools/SplitList.h:33:16: warning: ‘TreeTools::bitcounts’ defined but not used [-Wunused-variable] 33 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mast.cpp -o mast.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nni_distance.cpp -o nni_distance.o In file included from nni_distance.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include/TreeTools/SplitList.h:33:16: warning: ‘TreeTools::bitcounts’ defined but not used [-Wunused-variable] 33 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c path_vector.cpp -o path_vector.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c reduce_tree.cpp -o reduce_tree.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spr.cpp -o spr.o In file included from spr.cpp:6: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include/TreeTools/SplitList.h:33:16: warning: ‘TreeTools::bitcounts’ defined but not used [-Wunused-variable] 33 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree_distance_functions.cpp -o tree_distance_functions.o In file included from tree_distance_functions.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include/TreeTools/SplitList.h:33:16: warning: ‘TreeTools::bitcounts’ defined but not used [-Wunused-variable] 33 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree_distances.cpp -o tree_distances.o In file included from tree_distances.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TreeTools/include/TreeTools/SplitList.h:33:16: warning: ‘TreeTools::bitcounts’ defined but not used [-Wunused-variable] 33 | static int16 bitcounts[65536]; | ^~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o TreeDist.so RcppExports.o day_1985.o hmi.o hpart.o hpart_relabel.o lap.o mast.o nni_distance.o path_vector.o reduce_tree.o spr.o tree_distance_functions.o tree_distances.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcL0wiL/R.INSTALL2de86f2953ec76/TreeDist/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-TreeDist/00new/TreeDist/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TreeDist) begin installing package ‘Rogue’ * installing *source* package ‘Quartet’ ... ** this is package ‘Quartet’ version ‘1.2.7’ ** package ‘Quartet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8cAGxv/R.INSTALL2deb1b631ce278/Quartet/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AbstractDistanceCalculator.cpp -o AbstractDistanceCalculator.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AllQuartets.cpp -o AllQuartets.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c EdgeParser.cpp -o EdgeParser.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HDT.cpp -o HDT.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HDTCountingCCToC.cpp -o HDTCountingCCToC.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HDTCountingCTransform.cpp -o HDTCountingCTransform.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HDTCountingG.cpp -o HDTCountingG.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HDTCountingIGToC.cpp -o HDTCountingIGToC.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HDTCountingLeaf.cpp -o HDTCountingLeaf.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HDTFactory.cpp -o HDTFactory.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HDTListUtils.cpp -o HDTListUtils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NewickParser.cpp -o NewickParser.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c QuartetDistanceCalculator.cpp -o QuartetDistanceCalculator.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RootedTree.cpp -o RootedTree.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RootedTreeFactory.cpp -o RootedTreeFactory.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TripletDistanceCalculator.cpp -o TripletDistanceCalculator.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c int_stuff.cpp -o int_stuff.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rQuartetDist.cpp -o rQuartetDist.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rTripletDist.cpp -o rTripletDist.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Quartet.so AbstractDistanceCalculator.o AllQuartets.o EdgeParser.o HDT.o HDTCountingCCToC.o HDTCountingCTransform.o HDTCountingG.o HDTCountingIGToC.o HDTCountingLeaf.o HDTFactory.o HDTListUtils.o NewickParser.o QuartetDistanceCalculator.o RcppExports.o RootedTree.o RootedTreeFactory.o TripletDistanceCalculator.o int_stuff.o rQuartetDist.o rTripletDist.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8cAGxv/R.INSTALL2deb1b631ce278/Quartet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Quartet/00new/Quartet/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Quartet) * installing *source* package ‘threeBrain’ ... ** this is package ‘threeBrain’ version ‘1.2.0’ ** package ‘threeBrain’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (threeBrain) * installing *source* package ‘ieegio’ ... ** this is package ‘ieegio’ version ‘0.0.5’ ** package ‘ieegio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ieegio) * installing *source* package ‘Rogue’ ... ** this is package ‘Rogue’ version ‘2.1.7’ ** package ‘Rogue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0HGNbF/R.INSTALL2df36475795528/Rogue/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c graph_geodesic.c -o graph_geodesic.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/Array.c -o rnr/Array.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/BitVector.c -o rnr/BitVector.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/Dropset.c -o rnr/Dropset.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/HashTable.c -o rnr/HashTable.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/List.c -o rnr/List.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/Node.c -o rnr/Node.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/ProfileElem.c -o rnr/ProfileElem.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/RogueNaRok.c -o rnr/RogueNaRok.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/Tree.c -o rnr/Tree.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/common.c -o rnr/common.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/legacy.c -o rnr/legacy.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rnr/newFunctions.c -o rnr/newFunctions.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rogue_init.c -o Rogue_init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rogue.so graph_geodesic.o rnr/Array.o rnr/BitVector.o rnr/Dropset.o rnr/HashTable.o rnr/List.o rnr/Node.o rnr/ProfileElem.o rnr/RogueNaRok.o rnr/Tree.o rnr/common.o rnr/legacy.o rnr/newFunctions.o Rogue_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0HGNbF/R.INSTALL2df36475795528/Rogue/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rogue/00new/Rogue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rogue) * installing *source* package ‘RClickhouse’ ... ** this is package ‘RClickhouse’ version ‘0.6.10’ ** package ‘RClickhouse’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSo4LZV/R.INSTALL2ddeff1db9a97b/RClickhouse/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RClickhouse_init.c -o RClickhouse_init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c connection.cpp -o connection.o connection.cpp: In instantiation of ‘std::shared_ptr<_Tp> vecToEnum(SEXP, clickhouse::TypeRef, std::shared_ptr >) [with CT = clickhouse::ColumnEnum; VT = signed char; SEXP = SEXPREC*; clickhouse::TypeRef = std::shared_ptr]’: connection.cpp:399:44: required from here 399 | return vecToEnum(v, t, nullCol); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ connection.cpp:311:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 311 | for (size_t i = 0; i < levels.size(); i++) { | ~~^~~~~~~~~~~~~~~ connection.cpp: In instantiation of ‘std::shared_ptr<_Tp> vecToEnum(SEXP, clickhouse::TypeRef, std::shared_ptr >) [with CT = clickhouse::ColumnEnum; VT = short int; SEXP = SEXPREC*; clickhouse::TypeRef = std::shared_ptr]’: connection.cpp:401:46: required from here 401 | return vecToEnum(v, t, nullCol); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ connection.cpp:311:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 311 | for (size_t i = 0; i < levels.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c result.cpp -o result.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/string.cpp -o vendor/clickhouse-cpp/clickhouse/columns/string.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/date.cpp -o vendor/clickhouse-cpp/clickhouse/columns/date.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/numeric.cpp -o vendor/clickhouse-cpp/clickhouse/columns/numeric.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/decimal.cpp -o vendor/clickhouse-cpp/clickhouse/columns/decimal.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/tuple.cpp -o vendor/clickhouse-cpp/clickhouse/columns/tuple.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/array.cpp -o vendor/clickhouse-cpp/clickhouse/columns/array.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/factory.cpp -o vendor/clickhouse-cpp/clickhouse/columns/factory.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/nullable.cpp -o vendor/clickhouse-cpp/clickhouse/columns/nullable.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/enum.cpp -o vendor/clickhouse-cpp/clickhouse/columns/enum.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/uuid.cpp -o vendor/clickhouse-cpp/clickhouse/columns/uuid.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/ip4.cpp -o vendor/clickhouse-cpp/clickhouse/columns/ip4.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/columns/ip6.cpp -o vendor/clickhouse-cpp/clickhouse/columns/ip6.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/query.cpp -o vendor/clickhouse-cpp/clickhouse/query.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/platform.cpp -o vendor/clickhouse-cpp/clickhouse/base/platform.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/socket.cpp -o vendor/clickhouse-cpp/clickhouse/base/socket.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/input.cpp -o vendor/clickhouse-cpp/clickhouse/base/input.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/output.cpp -o vendor/clickhouse-cpp/clickhouse/base/output.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/coded.cpp -o vendor/clickhouse-cpp/clickhouse/base/coded.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/base/compressed.cpp -o vendor/clickhouse-cpp/clickhouse/base/compressed.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/client.cpp -o vendor/clickhouse-cpp/clickhouse/client.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/types/types.cpp -o vendor/clickhouse-cpp/clickhouse/types/types.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/types/type_parser.cpp -o vendor/clickhouse-cpp/clickhouse/types/type_parser.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/clickhouse/block.cpp -o vendor/clickhouse-cpp/clickhouse/block.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vendor/clickhouse-cpp/contrib/cityhash/city.cc -o vendor/clickhouse-cpp/contrib/cityhash/city.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vendor/clickhouse-cpp/contrib/lz4/lz4.c -o vendor/clickhouse-cpp/contrib/lz4/lz4.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include -I./vendor/clickhouse-cpp -I./vendor/clickhouse-cpp/contrib -I./vendor/clickhouse-cpp/contrib/bigerint -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vendor/clickhouse-cpp/contrib/lz4/lz4hc.c -o vendor/clickhouse-cpp/contrib/lz4/lz4hc.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RClickhouse.so RClickhouse_init.o RcppExports.o connection.o result.o vendor/clickhouse-cpp/clickhouse/columns/string.o vendor/clickhouse-cpp/clickhouse/columns/date.o vendor/clickhouse-cpp/clickhouse/columns/numeric.o vendor/clickhouse-cpp/clickhouse/columns/decimal.o vendor/clickhouse-cpp/clickhouse/columns/tuple.o vendor/clickhouse-cpp/clickhouse/columns/array.o vendor/clickhouse-cpp/clickhouse/columns/factory.o vendor/clickhouse-cpp/clickhouse/columns/nullable.o vendor/clickhouse-cpp/clickhouse/columns/enum.o vendor/clickhouse-cpp/clickhouse/columns/uuid.o vendor/clickhouse-cpp/clickhouse/columns/ip4.o vendor/clickhouse-cpp/clickhouse/columns/ip6.o vendor/clickhouse-cpp/clickhouse/query.o vendor/clickhouse-cpp/clickhouse/base/platform.o vendor/clickhouse-cpp/clickhouse/base/socket.o vendor/clickhouse-cpp/clickhouse/base/input.o vendor/clickhouse-cpp/clickhouse/base/output.o vendor/clickhouse-cpp/clickhouse/base/coded.o vendor/clickhouse-cpp/clickhouse/base/compressed.o vendor/clickhouse-cpp/clickhouse/client.o vendor/clickhouse-cpp/clickhouse/types/types.o vendor/clickhouse-cpp/clickhouse/types/type_parser.o vendor/clickhouse-cpp/clickhouse/block.o vendor/clickhouse-cpp/contrib/cityhash/city.o vendor/clickhouse-cpp/contrib/lz4/lz4.o vendor/clickhouse-cpp/contrib/lz4/lz4hc.o -lpthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSo4LZV/R.INSTALL2ddeff1db9a97b/RClickhouse/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RClickhouse/00new/RClickhouse/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RClickhouse) * installing *source* package ‘otelsdk’ ... ** this is package ‘otelsdk’ version ‘0.2.2’ ** package ‘otelsdk’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src' rm -f otelcpplib tar xzf vendor/opentelemetry-cpp.tgz --no-same-owner || \ tar xzf vendor/opentelemetry-cpp.tgz mkdir -p cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1 cp status.proto \ cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1/ patch -p0 < vendor/opentelemetry-cpp.patch patching file cpp/exporters/otlp/src/otlp_file_client.cc Hunk #1 succeeded at 1256 (offset 3 lines). patching file cpp/third_party/opentelemetry-proto/Makefile patching file cpp/cmake/opentelemetry-proto.cmake Hunk #1 succeeded at 67 (offset -23 lines). Hunk #2 succeeded at 107 (offset -23 lines). Hunk #3 succeeded at 131 (offset -23 lines). Hunk #4 succeeded at 252 (offset -4 lines). Hunk #5 succeeded at 288 (offset -4 lines). Hunk #6 succeeded at 301 (offset -4 lines). Hunk #7 succeeded at 326 (offset -3 lines). patching file cpp/sdk/src/metrics/meter_context.cc Hunk #1 succeeded at 157 (offset 3 lines). Hunk #2 succeeded at 173 (offset 3 lines). patching file cpp/sdk/include/opentelemetry/sdk/metrics/meter_context.h patching file cpp/sdk/src/metrics/meter_provider.cc Hunk #1 succeeded at 163 (offset 4 lines). patching file cpp/exporters/otlp/src/otlp_file_client.cc patching file cpp/api/include/opentelemetry/trace/span.h patching file cpp/sdk/include/opentelemetry/sdk/trace/multi_recordable.h patching file cpp/sdk/include/opentelemetry/sdk/trace/recordable.h patching file cpp/sdk/src/trace/span.cc patching file cpp/api/include/opentelemetry/trace/default_span.h patching file cpp/api/include/opentelemetry/trace/noop.h patching file cpp/sdk/src/trace/span.h patching file cpp/sdk/include/opentelemetry/sdk/trace/span_data.h patching file cpp/exporters/otlp/include/opentelemetry/exporters/otlp/otlp_recordable.h patching file cpp/exporters/otlp/src/otlp_recordable.cc patching file cpp/api/include/opentelemetry/context/runtime_context.h patching file cpp/sdk/include/opentelemetry/sdk/common/circular_buffer.h (cd cpp; MAKEFLAGS= CC="gcc-15" CXX="g++-15 -std=gnu++17" AR="ar" \ RANLIB="ranlib" CPPFLAGS="-I/usr/local/include" \ CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native -fpic -DNDEBUG " \ CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNDEBUG " \ ""/usr/bin/cmake"" -S . -B build \ -DWITH_ABI_VERSION_1=OFF -DWITH_ABI_VERSION_2=ON \ -DCMAKE_INSTALL_PREFIX=../install -DCMAKE_INSTALL_LIBDIR=lib \ -DCMAKE_PREFIX_PATH="" \ -DCMAKE_POSITION_INDEPENDENT_CODE=ON \ -DBUILD_SHARED_LIBS=OFF -DCMAKE_CXX_STANDARD=14 \ -DWITH_ELASTICSEARCH=OFF -DWITH_EXAMPLES=OFF \ -DWITH_OTLP_GRPC=OFF -DWITH_OTLP_HTTP=ON -DWITH_OTLP_FILE=ON \ -DWITH_ABSEIL=OFF -DWITH_PROMETHEUS=OFF -DBUILD_TESTING=OFF \ -DWITH_BENCHMARK=OFF -DWITH_FUNC_TESTS=OFF -DWITH_ETW=OFF) CMake Deprecation Warning at CMakeLists.txt:25 (cmake_policy): The OLD behavior for policy CMP0092 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc-15 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++-15 - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- OPENTELEMETRY_ABI_VERSION_NO=2 -- OPENTELEMETRY_VERSION=1.22.0 -- Performing Test check_cxx_compiler_flag_-Wno-type-limits -- Performing Test check_cxx_compiler_flag_-Wno-type-limits - Success -- Performing Test check_cxx_compiler_flag_-Wno-deprecated-declarations -- Performing Test check_cxx_compiler_flag_-Wno-deprecated-declarations - Success -- Performing Test check_cxx_compiler_flag_-Wno-unused-parameter -- Performing Test check_cxx_compiler_flag_-Wno-unused-parameter - Success -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Could NOT find Protobuf (missing: Protobuf_DIR) -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so (found version "3.21.12") -- PROTOBUF_PROTOC_EXECUTABLE=/usr/bin/protoc -- fetching opentelemetry-proto from git submodule -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.16.0") -- Using the single-header code from /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/nlohmann-json/single_include/ -- --------------------------------------------- -- build settings -- --------------------------------------------- -- OpenTelemetry: 1.22.0 -- OpenTelemetry ABI: 2 -- CMAKE_SYSTEM_PROCESSOR: x86_64 -- CXX: GNU 15.2.0 -- CMAKE_BUILD_TYPE: -- CXXFLAGS: -g -O2 -Wall -pedantic -mtune=native -fpic -DNDEBUG -- CMAKE_CXX_STANDARD: 14 -- CMAKE_TOOLCHAIN_FILE: -- BUILD_SHARED_LIBS: OFF -- --------------------------------------------- -- opentelemetry-cpp build options -- --------------------------------------------- -- WITH_API_ONLY: OFF -- WITH_NO_DEPRECATED_CODE: OFF -- WITH_ABI_VERSION_1: OFF -- WITH_ABI_VERSION_2: ON -- OTELCPP_VERSIONED_LIBS: OFF -- OTELCPP_MAINTAINER_MODE: OFF -- WITH_STL: OFF -- WITH_GSL: OFF -- WITH_NO_GETENV: OFF -- --------------------------------------------- -- opentelemetry-cpp cmake component options -- --------------------------------------------- -- WITH_OTLP_GRPC: OFF -- WITH_OTLP_HTTP: ON -- WITH_OTLP_FILE: ON -- WITH_HTTP_CLIENT_CURL: ON -- WITH_ZIPKIN: OFF -- WITH_PROMETHEUS: OFF -- WITH_ELASTICSEARCH: OFF -- WITH_OPENTRACING: OFF -- WITH_ETW: OFF -- OPENTELEMETRY_BUILD_DLL: -- --------------------------------------------- -- feature preview options -- --------------------------------------------- -- WITH_ASYNC_EXPORT_PREVIEW: OFF -- WITH_THREAD_INSTRUMENTATION_PREVIEW: OFF -- WITH_METRICS_EXEMPLAR_PREVIEW: OFF -- WITH_OTLP_GRPC_SSL_MTLS_PREVIEW: OFF -- WITH_OTLP_GRPC_CREDENTIAL_PREVIEW: OFF -- WITH_OTLP_RETRY_PREVIEW: OFF -- --------------------------------------------- -- third-party options -- --------------------------------------------- -- WITH_NLOHMANN_JSON: ON -- WITH_CURL_LOGGING: OFF -- WITH_OTLP_HTTP_COMPRESSION: OFF -- --------------------------------------------- -- examples and test options -- --------------------------------------------- -- WITH_BENCHMARK: OFF -- WITH_EXAMPLES: OFF -- WITH_EXAMPLES_HTTP: OFF -- WITH_FUNC_TESTS: OFF -- BUILD_W3CTRACECONTEXT_TEST: OFF -- BUILD_TESTING: OFF -- --------------------------------------------- -- versions -- --------------------------------------------- -- CMake: 3.31.6 -- GTest: () -- benchmark: () -- Protobuf: 3.21.12 -- CURL: 8.16.0 -- nlohmann-json: (fetch_source) -- --------------------------------------------- -- Building WITH_STL=OFF -- Installing components: -- Install COMPONENT api -- TARGETS: opentelemetry_api -- TARGETS_ALIAS: opentelemetry-cpp::api -- COMPONENT_DEPENDS: -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/api/include/opentelemetry -- FILES_DESTINATION: include -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT sdk -- TARGETS: opentelemetry_sdk;opentelemetry_common;opentelemetry_resources;opentelemetry_version;opentelemetry_logs;opentelemetry_trace;opentelemetry_metrics -- TARGETS_ALIAS: opentelemetry-cpp::sdk;opentelemetry-cpp::common;opentelemetry-cpp::resources;opentelemetry-cpp::version;opentelemetry-cpp::logs;opentelemetry-cpp::trace;opentelemetry-cpp::metrics -- COMPONENT_DEPENDS: api -- THIRDPARTY_DEPENDS: Threads -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/sdk/include/opentelemetry/ -- FILES_DESTINATION: include/opentelemetry -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT ext_common -- TARGETS: opentelemetry_ext -- TARGETS_ALIAS: opentelemetry-cpp::ext -- COMPONENT_DEPENDS: api -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/ext/include/opentelemetry/ext -- FILES_DESTINATION: include/opentelemetry/ -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT ext_http_curl -- TARGETS: opentelemetry_http_client_curl -- TARGETS_ALIAS: opentelemetry-cpp::http_client_curl -- COMPONENT_DEPENDS: api;sdk;ext_common -- THIRDPARTY_DEPENDS: CURL -- FILES_DIRECTORY: -- FILES_DESTINATION: -- FILES_MATCHING: -- Install COMPONENT exporters_otlp_common -- TARGETS: opentelemetry_otlp_recordable;opentelemetry_proto -- TARGETS_ALIAS: opentelemetry-cpp::otlp_recordable;opentelemetry-cpp::proto -- COMPONENT_DEPENDS: api;sdk -- THIRDPARTY_DEPENDS: Protobuf -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/exporters/otlp/include/opentelemetry/exporters/otlp -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;*.h;PATTERN;otlp_http*.h;EXCLUDE;PATTERN;otlp_grpc*.h;EXCLUDE;PATTERN;otlp_file*.h;EXCLUDE -- Install COMPONENT exporters_otlp_http -- TARGETS: opentelemetry_exporter_otlp_http_client;opentelemetry_exporter_otlp_http;opentelemetry_exporter_otlp_http_log;opentelemetry_exporter_otlp_http_metric -- TARGETS_ALIAS: opentelemetry-cpp::otlp_http_client;opentelemetry-cpp::otlp_http_exporter;opentelemetry-cpp::otlp_http_log_record_exporter;opentelemetry-cpp::otlp_http_metric_exporter -- COMPONENT_DEPENDS: api;sdk;ext_common;exporters_otlp_common;ext_http_curl -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/exporters/otlp/include/opentelemetry/exporters/otlp -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;otlp_http*.h -- Install COMPONENT exporters_otlp_file -- TARGETS: opentelemetry_exporter_otlp_file_client;opentelemetry_exporter_otlp_file;opentelemetry_exporter_otlp_file_log;opentelemetry_exporter_otlp_file_metric -- TARGETS_ALIAS: opentelemetry-cpp::otlp_file_client;opentelemetry-cpp::otlp_file_exporter;opentelemetry-cpp::otlp_file_log_record_exporter;opentelemetry-cpp::otlp_file_metric_exporter -- COMPONENT_DEPENDS: api;sdk;exporters_otlp_common -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/exporters/otlp/include/opentelemetry/exporters/otlp -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;otlp_file*.h -- Install COMPONENT exporters_ostream -- TARGETS: opentelemetry_exporter_ostream_span;opentelemetry_exporter_ostream_metrics;opentelemetry_exporter_ostream_logs -- TARGETS_ALIAS: opentelemetry-cpp::ostream_span_exporter;opentelemetry-cpp::ostream_metrics_exporter;opentelemetry-cpp::ostream_log_record_exporter -- COMPONENT_DEPENDS: api;sdk -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/exporters/ostream/include/opentelemetry/exporters/ostream -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;*.h -- Install COMPONENT exporters_in_memory -- TARGETS: opentelemetry_exporter_in_memory;opentelemetry_exporter_in_memory_metric -- TARGETS_ALIAS: opentelemetry-cpp::in_memory_span_exporter;opentelemetry-cpp::in_memory_metric_exporter -- COMPONENT_DEPENDS: api;sdk -- THIRDPARTY_DEPENDS: -- FILES_DIRECTORY: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/exporters/memory/include/opentelemetry/exporters/memory -- FILES_DESTINATION: include/opentelemetry/exporters -- FILES_MATCHING: PATTERN;*.h -- Configuring done (2.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: WITH_ABSEIL -- Build files have been written to: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/build (cd cpp; ""/usr/bin/cmake"" --build build 2>&1) | cat gmake[2]: Entering directory '/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/build' [ 0%] [Run]: "/usr/bin/protoc" "--proto_path=/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto" "--cpp_out=/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/build/generated/third_party/opentelemetry-proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/common/v1/common.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/resource/v1/resource.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/trace/v1/trace.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/logs/v1/logs.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/metrics/v1/metrics.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/profiles/v1development/profiles.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/trace/v1/trace_service.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/logs/v1/logs_service.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/metrics/v1/metrics_service.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/profiles/v1development/profiles_service.proto" "/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1/status.proto" [ 1%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/common/v1/common.pb.cc.o [ 2%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/resource/v1/resource.pb.cc.o [ 2%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/trace/v1/trace.pb.cc.o [ 3%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/logs/v1/logs.pb.cc.o [ 4%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/metrics/v1/metrics.pb.cc.o [ 4%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/trace/v1/trace_service.pb.cc.o [ 5%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/logs/v1/logs_service.pb.cc.o [ 6%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/metrics/v1/metrics_service.pb.cc.o [ 6%] Building CXX object CMakeFiles/opentelemetry_proto.dir/generated/third_party/opentelemetry-proto/opentelemetry/proto/collector/common/v1/status.pb.cc.o [ 7%] Linking CXX static library libopentelemetry_proto.a [ 7%] Built target opentelemetry_proto [ 7%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/random.cc.o [ 8%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/global_log_handler.cc.o [ 9%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/env_variables.cc.o [ 9%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/base64.cc.o [ 10%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/disabled.cc.o [ 11%] Building CXX object sdk/src/common/CMakeFiles/opentelemetry_common.dir/platform/fork_unix.cc.o [ 11%] Linking CXX static library libopentelemetry_common.a [ 11%] Built target opentelemetry_common [ 12%] Building CXX object sdk/src/resource/CMakeFiles/opentelemetry_resources.dir/resource.cc.o [ 12%] Building CXX object sdk/src/resource/CMakeFiles/opentelemetry_resources.dir/resource_detector.cc.o [ 13%] Linking CXX static library libopentelemetry_resources.a [ 13%] Built target opentelemetry_resources [ 14%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_context.cc.o [ 14%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_context_factory.cc.o [ 15%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_provider.cc.o [ 16%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_provider_factory.cc.o [ 16%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer.cc.o [ 17%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/span.cc.o [ 18%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/exporter.cc.o [ 18%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/provider.cc.o [ 19%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/batch_span_processor.cc.o [ 20%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/batch_span_processor_factory.cc.o [ 20%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/simple_processor_factory.cc.o [ 21%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/always_on_factory.cc.o [ 22%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/always_off_factory.cc.o [ 22%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/parent.cc.o [ 23%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/parent_factory.cc.o [ 24%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/trace_id_ratio.cc.o [ 24%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/samplers/trace_id_ratio_factory.cc.o [ 25%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/random_id_generator.cc.o [ 26%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/random_id_generator_factory.cc.o [ 26%] Building CXX object sdk/src/trace/CMakeFiles/opentelemetry_trace.dir/tracer_config.cc.o [ 27%] Linking CXX static library libopentelemetry_trace.a [ 27%] Built target opentelemetry_trace [ 28%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/async_instruments.cc.o [ 28%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/provider.cc.o [ 29%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_provider.cc.o [ 30%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_provider_factory.cc.o [ 30%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter.cc.o [ 31%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_config.cc.o [ 32%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_context.cc.o [ 32%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/meter_context_factory.cc.o [ 33%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/metric_reader.cc.o [ 34%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/instrument_metadata_validator.cc.o [ 34%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/export/periodic_exporting_metric_reader.cc.o [ 35%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/export/periodic_exporting_metric_reader_factory.cc.o [ 36%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/filtered_ordered_attribute_map.cc.o [ 36%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/metric_collector.cc.o [ 37%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/observable_registry.cc.o [ 38%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/sync_metric_storage.cc.o [ 38%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/state/temporal_metric_storage.cc.o [ 39%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/base2_exponential_histogram_aggregation.cc.o [ 40%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/base2_exponential_histogram_indexer.cc.o [ 40%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/histogram_aggregation.cc.o [ 41%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/lastvalue_aggregation.cc.o [ 42%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/aggregation/sum_aggregation.cc.o [ 42%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/data/circular_buffer.cc.o [ 43%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/exemplar/reservoir.cc.o [ 44%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/instrument_selector_factory.cc.o [ 44%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/meter_selector_factory.cc.o [ 45%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/view_factory.cc.o [ 46%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/view/view_registry_factory.cc.o [ 46%] Building CXX object sdk/src/metrics/CMakeFiles/opentelemetry_metrics.dir/sync_instruments.cc.o [ 47%] Linking CXX static library libopentelemetry_metrics.a [ 47%] Built target opentelemetry_metrics [ 47%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/provider.cc.o [ 48%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_provider.cc.o [ 49%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_provider_factory.cc.o [ 49%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger.cc.o [ 50%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/exporter.cc.o [ 51%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/event_logger_provider.cc.o [ 51%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/event_logger_provider_factory.cc.o [ 52%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/event_logger.cc.o [ 53%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/simple_log_record_processor.cc.o [ 53%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/simple_log_record_processor_factory.cc.o [ 54%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/batch_log_record_processor.cc.o [ 55%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/batch_log_record_processor_factory.cc.o [ 55%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_config.cc.o [ 56%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_context.cc.o [ 57%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/logger_context_factory.cc.o [ 57%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/multi_log_record_processor.cc.o [ 58%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/multi_log_record_processor_factory.cc.o [ 59%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/multi_recordable.cc.o [ 59%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/read_write_log_record.cc.o [ 60%] Building CXX object sdk/src/logs/CMakeFiles/opentelemetry_logs.dir/readable_log_record.cc.o [ 61%] Linking CXX static library libopentelemetry_logs.a [ 61%] Built target opentelemetry_logs [ 62%] Building CXX object sdk/src/version/CMakeFiles/opentelemetry_version.dir/version.cc.o [ 63%] Linking CXX static library libopentelemetry_version.a [ 63%] Built target opentelemetry_version [ 64%] Building CXX object ext/src/http/client/curl/CMakeFiles/opentelemetry_http_client_curl.dir/http_client_factory_curl.cc.o [ 64%] Building CXX object ext/src/http/client/curl/CMakeFiles/opentelemetry_http_client_curl.dir/http_client_curl.cc.o [ 65%] Building CXX object ext/src/http/client/curl/CMakeFiles/opentelemetry_http_client_curl.dir/http_operation_curl.cc.o [ 66%] Linking CXX static library libopentelemetry_http_client_curl.a [ 66%] Built target opentelemetry_http_client_curl [ 67%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_environment.cc.o [ 67%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_log_recordable.cc.o [ 68%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_recordable.cc.o [ 69%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_populate_attribute_utils.cc.o [ 69%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_recordable_utils.cc.o [ 70%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_otlp_recordable.dir/src/otlp_metric_utils.cc.o [ 71%] Linking CXX static library libopentelemetry_otlp_recordable.a [ 71%] Built target opentelemetry_otlp_recordable [ 71%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_client.dir/src/otlp_http.cc.o [ 72%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_client.dir/src/otlp_http_client.cc.o [ 73%] Linking CXX static library libopentelemetry_exporter_otlp_http_client.a [ 73%] Built target opentelemetry_exporter_otlp_http_client [ 74%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http.dir/src/otlp_http_exporter.cc.o [ 74%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http.dir/src/otlp_http_exporter_factory.cc.o [ 75%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http.dir/src/otlp_http_exporter_options.cc.o [ 76%] Linking CXX static library libopentelemetry_exporter_otlp_http.a [ 76%] Built target opentelemetry_exporter_otlp_http [ 76%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_log.dir/src/otlp_http_log_record_exporter.cc.o [ 77%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_log.dir/src/otlp_http_log_record_exporter_factory.cc.o [ 78%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_log.dir/src/otlp_http_log_record_exporter_options.cc.o [ 78%] Linking CXX static library libopentelemetry_exporter_otlp_http_log.a [ 78%] Built target opentelemetry_exporter_otlp_http_log [ 79%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_metric.dir/src/otlp_http_metric_exporter.cc.o [ 80%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_metric.dir/src/otlp_http_metric_exporter_factory.cc.o [ 80%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_http_metric.dir/src/otlp_http_metric_exporter_options.cc.o [ 81%] Linking CXX static library libopentelemetry_exporter_otlp_http_metric.a [ 81%] Built target opentelemetry_exporter_otlp_http_metric [ 82%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_client.dir/src/otlp_file_client.cc.o [ 83%] Linking CXX static library libopentelemetry_exporter_otlp_file_client.a [ 83%] Built target opentelemetry_exporter_otlp_file_client [ 83%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file.dir/src/otlp_file_exporter.cc.o [ 84%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file.dir/src/otlp_file_exporter_factory.cc.o [ 85%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file.dir/src/otlp_file_exporter_options.cc.o [ 85%] Linking CXX static library libopentelemetry_exporter_otlp_file.a [ 85%] Built target opentelemetry_exporter_otlp_file [ 85%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_log.dir/src/otlp_file_log_record_exporter.cc.o [ 86%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_log.dir/src/otlp_file_log_record_exporter_factory.cc.o [ 87%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_log.dir/src/otlp_file_log_record_exporter_options.cc.o [ 87%] Linking CXX static library libopentelemetry_exporter_otlp_file_log.a [ 87%] Built target opentelemetry_exporter_otlp_file_log [ 88%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_metric.dir/src/otlp_file_metric_exporter.cc.o [ 89%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_metric.dir/src/otlp_file_metric_exporter_factory.cc.o [ 89%] Building CXX object exporters/otlp/CMakeFiles/opentelemetry_exporter_otlp_file_metric.dir/src/otlp_file_metric_exporter_options.cc.o [ 90%] Linking CXX static library libopentelemetry_exporter_otlp_file_metric.a [ 90%] Built target opentelemetry_exporter_otlp_file_metric [ 90%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_span.dir/src/span_exporter.cc.o [ 91%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_span.dir/src/span_exporter_factory.cc.o [ 92%] Linking CXX static library libopentelemetry_exporter_ostream_span.a [ 92%] Built target opentelemetry_exporter_ostream_span [ 92%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_metrics.dir/src/metric_exporter.cc.o [ 93%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_metrics.dir/src/metric_exporter_factory.cc.o [ 94%] Linking CXX static library libopentelemetry_exporter_ostream_metrics.a [ 94%] Built target opentelemetry_exporter_ostream_metrics [ 94%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_logs.dir/src/log_record_exporter.cc.o [ 95%] Building CXX object exporters/ostream/CMakeFiles/opentelemetry_exporter_ostream_logs.dir/src/log_record_exporter_factory.cc.o [ 96%] Linking CXX static library libopentelemetry_exporter_ostream_logs.a [ 96%] Built target opentelemetry_exporter_ostream_logs [ 97%] Building CXX object exporters/memory/CMakeFiles/opentelemetry_exporter_in_memory.dir/src/in_memory_span_exporter_factory.cc.o [ 98%] Linking CXX static library libopentelemetry_exporter_in_memory.a [ 98%] Built target opentelemetry_exporter_in_memory [ 98%] Building CXX object exporters/memory/CMakeFiles/opentelemetry_exporter_in_memory_metric.dir/src/in_memory_metric_exporter_factory.cc.o [ 99%] Building CXX object exporters/memory/CMakeFiles/opentelemetry_exporter_in_memory_metric.dir/src/in_memory_metric_data.cc.o [100%] Linking CXX static library libopentelemetry_exporter_in_memory_metric.a [100%] Built target opentelemetry_exporter_in_memory_metric gmake[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/cpp/build' (cd cpp; ""/usr/bin/cmake"" --install build) -- Install configuration: "" -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/proto -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/proto/common -- Installing: 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/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/otlp -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/otlp/otlp_http_log_record_exporter_options.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/otlp/otlp_http_metric_exporter.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/otlp/otlp_http.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/otlp/otlp_http_exporter_options.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/otlp/otlp_http_exporter_factory.h -- Installing: 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Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/otlp/otlp_http_log_record_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/otlp/otlp_http_metric_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/otlp/otlp_http_exporter.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/lib/libopentelemetry_exporter_otlp_file_client.a -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/lib/libopentelemetry_exporter_otlp_file.a -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/lib/libopentelemetry_exporter_otlp_file_log.a -- Installing: 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/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_metric_data.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_metric_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_span_exporter.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_span_exporter.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_metric_data.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_span_data.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/memory/._in_memory_span_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/include/opentelemetry/exporters/memory/in_memory_metric_exporter_factory.h -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/lib/cmake/opentelemetry-cpp/component-definitions.cmake -- Installing: /home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src/install/lib/cmake/opentelemetry-cpp/thirdparty-dependency-definitions.cmake touch otelcpplib gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cleancall.c -o cleancall.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrap-r.c -o wrap-r.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrap-c.cc -o wrap-c.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glue.c -o glue.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c span.c -o span.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c context.c -o context.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tracer.c -o tracer.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tracer-sdk.cc -o tracer-sdk.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tracer-api.cc -o tracer-api.o tracer-api.cc: In function ‘void otel_span_set_status_(void*, int, char*)’: tracer-api.cc:300:19: warning: ‘status_code’ may be used uninitialized [-Wmaybe-uninitialized] 300 | span.SetStatus(status_code); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ tracer-api.cc:289:21: note: ‘status_code’ was declared here 289 | trace::StatusCode status_code; | ^~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c meter.c -o meter.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c meter-sdk.cc -o meter-sdk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logger.c -o logger.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logger-sdk.cc -o logger-sdk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r-collector.c -o r-collector.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c collector.cc -o collector.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iinstall/include -DOPENTELEMETRY_ABI_VERSION_NO=2 -DOTEL_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c stdstream.cc -o stdstream.o ar rs libstdstream-exporter.a stdstream.o ar: creating libstdstream-exporter.a g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o otelsdk.so init.o cleancall.o wrap-r.o wrap-c.o glue.o utils.o errors.o span.o context.o tracer.o tracer-sdk.o tracer-api.o meter.o meter-sdk.o logger.o logger-sdk.o r-collector.o collector.o -Linstall/lib libstdstream-exporter.a -lopentelemetry_exporter_ostream_span -lopentelemetry_exporter_otlp_http -lopentelemetry_exporter_otlp_http_client -lopentelemetry_exporter_ostream_logs -lopentelemetry_exporter_otlp_http_log -lopentelemetry_exporter_otlp_http_metric -lopentelemetry_exporter_ostream_metrics -lopentelemetry_exporter_otlp_file -lopentelemetry_exporter_otlp_file_log -lopentelemetry_exporter_otlp_file_metric -lopentelemetry_exporter_in_memory -lopentelemetry_exporter_in_memory_metric -lopentelemetry_exporter_otlp_file_client -lopentelemetry_http_client_curl -lopentelemetry_otlp_recordable -lopentelemetry_trace -lopentelemetry_logs -lopentelemetry_metrics -lopentelemetry_resources -lopentelemetry_common -lopentelemetry_proto -lprotobuf -lcurl libstdstream-exporter.a -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMquDnF/R.INSTALL2de36b520b7d4/otelsdk/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-otelsdk/00new/otelsdk/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (otelsdk) checking promises_1.4.0.tar.gz ... checking Certara.RsNLME.ModelExecutor_3.0.2.tar.gz ... checking chromote_0.5.1.tar.gz ... checking crew_1.3.0.tar.gz ... checking ellmer_0.3.2.tar.gz ... checking DT_0.34.0.tar.gz ... checking fiery_1.3.0.tar.gz ... checking FastRet_1.1.4.tar.gz ... checking gwavr_0.3.2.tar.gz ... checking httpuv_1.6.16.tar.gz ... checking lavaangui_0.3.0.tar.gz ... checking jobqueue_1.7.0.tar.gz ... checking mcptools_0.1.1.tar.gz ... checking netShiny_1.0.tar.gz ... checking learnr_0.11.5.tar.gz ... checking PacketLLM_0.1.1.tar.gz ... checking plotly_4.11.0.tar.gz ... checking plumber_1.3.0.tar.gz ... checking plumber2_0.1.0.tar.gz ... checking plumbertableau_0.1.1.tar.gz ... checking ravepipeline_0.0.3.tar.gz ... checking reqres_1.0.0.tar.gz ... checking routr_1.0.0.tar.gz ... checking shiny_1.11.1.tar.gz ... checking shinychat_0.2.0.tar.gz ... checking shinydashboard_0.7.3.tar.gz ... checking shinyTree_0.3.1.tar.gz ... checking tall_0.3.0.tar.gz ... checking ipc_0.1.4.tar.gz ... checking webshot2_0.1.2.tar.gz ... checking notionapi_0.1.0.tar.gz ... checking dipsaus_0.3.1.tar.gz ... checking MVN_6.2.tar.gz ... checking googlePubsubR_0.0.4.tar.gz ... checking TreeSearch_1.7.0.tar.gz ... checking TKCat_1.1.14.tar.gz ... checking chatLLM_0.1.3.tar.gz ... checking webdeveloper_1.0.5.tar.gz ... checking telegram.bot_3.0.1.tar.gz ... checking tapLock_0.2.0.tar.gz ... checking condformat_0.10.1.tar.gz ... checking httr2_1.2.1.tar.gz ... checking coro_1.1.0.tar.gz ... checking ambiorix_2.2.1.tar.gz ... checking aifeducation_1.1.2.tar.gz ... checking pagedown_0.23.tar.gz ... Depends: Package: promises Depends: R (>= 4.1.0) Imports: fastmap (>= 1.1.0), later, lifecycle, magrittr (>= 1.5), otel (>= 0.2.0), R6, rlang Timings: user system elapsed promises 61.648 6.323 83.182 Results: Check status summary: ERROR NOTE OK Source packages 0 1 0 Reverse depends 1 3 41 Check results summary: promises ... NOTE * checking CRAN incoming feasibility ... [9s/12s] NOTE rdepends_aifeducation ... OK rdepends_ambiorix ... OK rdepends_Certara.RsNLME.ModelExecutor ... NOTE * checking R code for possible problems ... [15s/15s] NOTE rdepends_chatLLM ... OK rdepends_chromote ... OK rdepends_condformat ... OK rdepends_coro ... OK rdepends_crew ... OK rdepends_dipsaus ... NOTE * checking compiled code ... NOTE rdepends_DT ... OK rdepends_ellmer ... OK rdepends_FastRet ... OK rdepends_fiery ... OK rdepends_googlePubsubR ... OK rdepends_gwavr ... ERROR * checking tests ... [2s/17s] ERROR rdepends_httpuv ... OK rdepends_httr2 ... OK rdepends_ipc ... OK rdepends_jobqueue ... OK rdepends_lavaangui ... OK rdepends_learnr ... OK rdepends_mcptools ... OK rdepends_MVN ... OK rdepends_netShiny ... OK rdepends_notionapi ... OK rdepends_PacketLLM ... OK rdepends_pagedown ... OK rdepends_plotly ... OK rdepends_plumber ... OK rdepends_plumber2 ... OK rdepends_plumbertableau ... OK rdepends_ravepipeline ... OK rdepends_reqres ... OK rdepends_routr ... OK rdepends_shiny ... OK rdepends_shinychat ... OK rdepends_shinydashboard ... OK rdepends_shinyTree ... OK rdepends_tall ... OK rdepends_tapLock ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_telegram.bot ... OK rdepends_TKCat ... OK rdepends_TreeSearch ... OK rdepends_webdeveloper ... OK rdepends_webshot2 ... OK Check results changes: Package: aifeducation Check: HTML version of manual Old result: NOTE New result: OK Package: ambiorix Check: HTML version of manual Old result: NOTE New result: OK Package: chromote Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: chromote Check: HTML version of manual Old result: NOTE New result: OK Package: condformat Check: HTML version of manual Old result: NOTE New result: OK Package: coro Check: HTML version of manual Old result: NOTE New result: OK Package: crew Check: HTML version of manual Old result: NOTE New result: OK Package: dipsaus Check: HTML version of manual Old result: NOTE New result: OK Package: ellmer Check: HTML version of manual Old result: NOTE New result: OK Package: fiery Check: HTML version of manual Old result: NOTE New result: OK Package: gwavr Check: HTML version of manual Old result: NOTE New result: OK Package: gwavr Check: tests New result: ERROR Package: httpuv Check: HTML version of manual Old result: NOTE New result: OK Package: httr2 Check: HTML version of manual Old result: NOTE New result: OK Package: ipc Check: CRAN incoming feasibility Old result: NOTE Package: ipc Check: HTML version of manual Old result: NOTE New result: OK Package: jobqueue Check: HTML version of manual Old result: NOTE New result: OK Package: learnr Check: HTML version of manual Old result: NOTE New result: OK Package: notionapi Check: HTML version of manual Old result: NOTE New result: OK Package: plotly Check: HTML version of manual Old result: NOTE New result: OK Package: plumber Check: HTML version of manual Old result: NOTE New result: OK Package: plumber2 Check: HTML version of manual Old result: NOTE New result: OK Package: ravepipeline Check: HTML version of manual Old result: NOTE New result: OK Package: reqres Check: HTML version of manual Old result: NOTE New result: OK Package: routr Check: HTML version of manual Old result: NOTE New result: OK Package: shiny Check: HTML version of manual Old result: NOTE New result: OK Package: shinydashboard Check: HTML version of manual Old result: NOTE New result: OK Package: shinyTree Check: HTML version of manual Old result: NOTE New result: OK Package: tapLock Check: HTML version of manual Old result: NOTE New result: OK Package: telegram.bot Check: HTML version of manual Old result: NOTE New result: OK Package: TKCat Check: HTML version of manual Old result: NOTE New result: OK Package: webdeveloper Check: CRAN incoming feasibility Old result: NOTE Package: webshot2 Check: DESCRIPTION meta-information Old result: NOTE New result: OK