#### eventlog #### test_that("test succession on eventlog", { load("./testdata/patients.rda") suc <- patients %>% check_rule(succession(activity_a = "surgery", activity_b = "treatment")) expect_s3_class(suc, "eventlog") expect_equal(dim(suc), c(nrow(patients), ncol(patients) + 1)) expect_equal(colnames(suc), c(colnames(patients), "succession_surgery_treatment")) # John Doe's 2nd "surgery" is not (eventually) followed by "treatment". # George Doe lacks both "treatment" and "surgery", so rule is satisfied. expect_true(all(suc[suc$patient != "John Doe",]$succession_surgery_treatment)) expect_false(any(suc[suc$patient == "John Doe",]$succession_surgery_treatment)) }) test_that("test succession on eventlog fails on non-existing activity", { load("./testdata/patients.rda") expect_error( suc <- patients %>% check_rule(succession("blood sample", "administer medication")), "*Activity blood sample not found in log*") expect_error( suc <- patients %>% check_rule(succession("check-in", "administer medication")), "*Activity administer medication not found in log*") }) test_that("test succession on grouped_eventlog", { load("./testdata/patients_grouped_resource.rda") suc <- patients_grouped_resource %>% check_rule(succession(activity_a = "surgery", activity_b = "treatment")) expect_s3_class(suc, "grouped_eventlog") expect_equal(dim(suc), c(nrow(patients_grouped_resource), ncol(patients_grouped_resource) + 1)) expect_equal(colnames(suc), c(colnames(patients_grouped_resource), "succession_surgery_treatment")) # John Doe's 2nd "surgery" is not (eventually) followed by "treatment". # George Doe lacks both "treatment" and "surgery", so rule is satisfied. expect_true(all(suc[suc$patient != "John Doe",]$succession_surgery_treatment)) expect_false(any(suc[suc$patient == "John Doe",]$succession_surgery_treatment)) }) #### activitylog #### test_that("test succession on activitylog", { load("./testdata/patients_act.rda") suc <- patients_act %>% check_rule(succession(activity_a = "surgery", activity_b = "treatment")) expect_s3_class(suc, "activitylog") expect_equal(dim(suc), c(nrow(patients_act), ncol(patients_act) + 1)) expect_equal(colnames(suc), c(colnames(patients_act), "succession_surgery_treatment")) # John Doe's 2nd "surgery" is not (eventually) followed by "treatment". # George Doe lacks both "treatment" and "surgery", so rule is satisfied. expect_true(all(suc[suc$patient != "John Doe",]$succession_surgery_treatment)) expect_false(any(suc[suc$patient == "John Doe",]$succession_surgery_treatment)) }) test_that("test succession on grouped_activitylog", { load("./testdata/patients_act_grouped_resource.rda") suc <- patients_act_grouped_resource %>% check_rule(succession(activity_a = "surgery", activity_b = "treatment")) expect_s3_class(suc, "grouped_activitylog") expect_equal(dim(suc), c(nrow(patients_act_grouped_resource), ncol(patients_act_grouped_resource) + 1)) expect_equal(colnames(suc), c(colnames(patients_act_grouped_resource), "succession_surgery_treatment")) # John Doe's 2nd "surgery" is not (eventually) followed by "treatment". # George Doe lacks both "treatment" and "surgery", so rule is satisfied. expect_true(all(suc[suc$patient != "John Doe",]$succession_surgery_treatment)) expect_false(any(suc[suc$patient == "John Doe",]$succession_surgery_treatment)) })