* using log directory 'd:/RCompile/CRANincoming/R-devel/priorityelasticnet.Rcheck' * using R Under development (unstable) (2026-02-09 r89390 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-02-10 16:10:32 UTC * checking for file 'priorityelasticnet/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'priorityelasticnet' version '1.2.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Eunice Carrasquinha ' New maintainer: Eunice Carrasquinha Old maintainer(s): Laila Qadir Musib * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'priorityelasticnet' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Author field differs from that derived from Authors@R Author: 'Laila Qadir Musib [aut], Helena Mouriño [aut], Eunice Carrasquinha [aut,cre],' Authors@R: 'Laila Qadir Musib [aut], Helena Mourino [aut], Eunice Carrasquinha [aut, cre]' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s] NOTE calculate_offsets : : no visible binding for global variable 'index_missingness_pattern' Undefined global functions or variables: index_missingness_pattern * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Data codoc mismatches from Rd file 'Pen_Data.Rd': Variables in data frame 'Pen_Data' Code: Clinical_Var1 Clinical_Var2 Clinical_Var3 Clinical_Var4 Clinical_Var5 Pen_out Proteomic_Var1 Proteomic_Var10 Proteomic_Var100 Proteomic_Var101 Proteomic_Var102 Proteomic_Var103 Proteomic_Var104 Proteomic_Var105 Proteomic_Var106 Proteomic_Var107 Proteomic_Var108 Proteomic_Var109 Proteomic_Var11 Proteomic_Var110 Proteomic_Var111 Proteomic_Var112 Proteomic_Var113 Proteomic_Var114 Proteomic_Var115 Proteomic_Var116 Proteomic_Var117 Proteomic_Var118 Proteomic_Var119 Proteomic_Var12 Proteomic_Var120 Proteomic_Var121 Proteomic_Var122 Proteomic_Var123 Proteomic_Var124 Proteomic_Var125 Proteomic_Var126 Proteomic_Var127 Proteomic_Var128 Proteomic_Var129 Proteomic_Var13 Proteomic_Var130 Proteomic_Var131 Proteomic_Var132 Proteomic_Var133 Proteomic_Var134 Proteomic_Var135 Proteomic_Var136 Proteomic_Var137 Proteomic_Var138 Proteomic_Var139 Proteomic_Var14 Proteomic_Var140 Proteomic_Var141 Proteomic_Var142 Proteomic_Var143 Proteomic_Var144 Proteomic_Var145 Proteomic_Var146 Proteomic_Var147 Proteomic_Var148 Proteomic_Var149 Proteomic_Var15 Proteomic_Var150 Proteomic_Var151 Proteomic_Var152 Proteomic_Var153 Proteomic_Var154 Proteomic_Var155 Proteomic_Var156 Proteomic_Var157 Proteomic_Var158 Proteomic_Var159 Proteomic_Var16 Proteomic_Var160 Proteomic_Var161 Proteomic_Var162 Proteomic_Var163 Proteomic_Var164 Proteomic_Var165 Proteomic_Var166 Proteomic_Var167 Proteomic_Var168 Proteomic_Var169 Proteomic_Var17 Proteomic_Var170 Proteomic_Var171 Proteomic_Var172 Proteomic_Var173 Proteomic_Var174 Proteomic_Var18 Proteomic_Var19 Proteomic_Var2 Proteomic_Var20 Proteomic_Var21 Proteomic_Var22 Proteomic_Var23 Proteomic_Var24 Proteomic_Var25 Proteomic_Var26 Proteomic_Var27 Proteomic_Var28 Proteomic_Var29 Proteomic_Var3 Proteomic_Var30 Proteomic_Var31 Proteomic_Var32 Proteomic_Var33 Proteomic_Var34 Proteomic_Var35 Proteomic_Var36 Proteomic_Var37 Proteomic_Var38 Proteomic_Var39 Proteomic_Var4 Proteomic_Var40 Proteomic_Var41 Proteomic_Var42 Proteomic_Var43 Proteomic_Var44 Proteomic_Var45 Proteomic_Var46 Proteomic_Var47 Proteomic_Var48 Proteomic_Var49 Proteomic_Var5 Proteomic_Var50 Proteomic_Var51 Proteomic_Var52 Proteomic_Var53 Proteomic_Var54 Proteomic_Var55 Proteomic_Var56 Proteomic_Var57 Proteomic_Var58 Proteomic_Var59 Proteomic_Var6 Proteomic_Var60 Proteomic_Var61 Proteomic_Var62 Proteomic_Var63 Proteomic_Var64 Proteomic_Var65 Proteomic_Var66 Proteomic_Var67 Proteomic_Var68 Proteomic_Var69 Proteomic_Var7 Proteomic_Var70 Proteomic_Var71 Proteomic_Var72 Proteomic_Var73 Proteomic_Var74 Proteomic_Var75 Proteomic_Var76 Proteomic_Var77 Proteomic_Var78 Proteomic_Var79 Proteomic_Var8 Proteomic_Var80 Proteomic_Var81 Proteomic_Var82 Proteomic_Var83 Proteomic_Var84 Proteomic_Var85 Proteomic_Var86 Proteomic_Var87 Proteomic_Var88 Proteomic_Var89 Proteomic_Var9 Proteomic_Var90 Proteomic_Var91 Proteomic_Var92 Proteomic_Var93 Proteomic_Var94 Proteomic_Var95 Proteomic_Var96 Proteomic_Var97 Proteomic_Var98 Proteomic_Var99 RNA_Var1 RNA_Var10 RNA_Var100 RNA_Var101 RNA_Var102 RNA_Var103 RNA_Var104 RNA_Var105 RNA_Var106 RNA_Var107 RNA_Var108 RNA_Var109 RNA_Var11 RNA_Var110 RNA_Var111 RNA_Var112 RNA_Var113 RNA_Var114 RNA_Var115 RNA_Var116 RNA_Var117 RNA_Var118 RNA_Var119 RNA_Var12 RNA_Var120 RNA_Var121 RNA_Var122 RNA_Var123 RNA_Var124 RNA_Var125 RNA_Var126 RNA_Var127 RNA_Var128 RNA_Var129 RNA_Var13 RNA_Var130 RNA_Var131 RNA_Var132 RNA_Var133 RNA_Var134 RNA_Var135 RNA_Var136 RNA_Var137 RNA_Var138 RNA_Var139 RNA_Var14 RNA_Var140 RNA_Var141 RNA_Var142 RNA_Var143 RNA_Var144 RNA_Var145 RNA_Var15 RNA_Var16 RNA_Var17 RNA_Var18 RNA_Var19 RNA_Var2 RNA_Var20 RNA_Var21 RNA_Var22 RNA_Var23 RNA_Var24 RNA_Var25 RNA_Var26 RNA_Var27 RNA_Var28 RNA_Var29 RNA_Var3 RNA_Var30 RNA_Var31 RNA_Var32 RNA_Var33 RNA_Var34 RNA_Var35 RNA_Var36 RNA_Var37 RNA_Var38 RNA_Var39 RNA_Var4 RNA_Var40 RNA_Var41 RNA_Var42 RNA_Var43 RNA_Var44 RNA_Var45 RNA_Var46 RNA_Var47 RNA_Var48 RNA_Var49 RNA_Var5 RNA_Var50 RNA_Var51 RNA_Var52 RNA_Var53 RNA_Var54 RNA_Var55 RNA_Var56 RNA_Var57 RNA_Var58 RNA_Var59 RNA_Var6 RNA_Var60 RNA_Var61 RNA_Var62 RNA_Var63 RNA_Var64 RNA_Var65 RNA_Var66 RNA_Var67 RNA_Var68 RNA_Var69 RNA_Var7 RNA_Var70 RNA_Var71 RNA_Var72 RNA_Var73 RNA_Var74 RNA_Var75 RNA_Var76 RNA_Var77 RNA_Var78 RNA_Var79 RNA_Var8 RNA_Var80 RNA_Var81 RNA_Var82 RNA_Var83 RNA_Var84 RNA_Var85 RNA_Var86 RNA_Var87 RNA_Var88 RNA_Var89 RNA_Var9 RNA_Var90 RNA_Var91 RNA_Var92 RNA_Var93 RNA_Var94 RNA_Var95 RNA_Var96 RNA_Var97 RNA_Var98 RNA_Var99 Docs: ... ... Clinical_Var1 Clinical_Var2 Clinical_Var3 Clinical_Var4 Clinical_Var5 Pen_out Proteomic_Var1 Proteomic_Var174 RNA_Var1 RNA_Var145 * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [95s] OK * checking PDF version of manual ... [12s] OK * checking HTML version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs