test_that("estimate_risk_partial() works", { res_from_partial <- estimate_risk_partial(quiet = TRUE) res_from_full <- estimate_risk( age = 50, sex = "f", sbp = 160, bp_tx = TRUE, total_c = 200, hdl_c = 45, statin = FALSE, dm = TRUE, smoking = FALSE, egfr = 90, bmi = 35, quiet = TRUE ) res_from_partial_change_age <- estimate_risk_partial(age = 67, quiet = TRUE) res_from_full_change_age <- estimate_risk( age = 67, sex = "f", sbp = 160, bp_tx = TRUE, total_c = 200, hdl_c = 45, statin = FALSE, dm = TRUE, smoking = FALSE, egfr = 90, bmi = 35, quiet = TRUE ) res_from_partial_change_bp_tx <- estimate_risk_partial(bp_tx = FALSE, quiet = TRUE) res_from_full_change_bp_tx <- estimate_risk( age = 50, sex = "f", sbp = 160, bp_tx = FALSE, total_c = 200, hdl_c = 45, statin = FALSE, dm = TRUE, smoking = FALSE, egfr = 90, bmi = 35, quiet = TRUE ) res_from_partial_change_sex <- estimate_risk_partial(sex = "m", quiet = TRUE) res_from_full_change_sex <- estimate_risk( age = 50, sex = "m", sbp = 160, bp_tx = TRUE, total_c = 200, hdl_c = 45, statin = FALSE, dm = TRUE, smoking = FALSE, egfr = 90, bmi = 35, quiet = TRUE ) res_from_partial_change_multiple <- estimate_risk_partial( sbp = 155, total_c = 188, hdl_c = 50, statin = TRUE, dm = FALSE, smoking = TRUE, egfr = 60, bmi = 30, hba1c = 9, uacr = 900, quiet = TRUE ) res_from_full_change_multiple <- estimate_risk( age = 50, sex = "f", sbp = 155, bp_tx = TRUE, total_c = 188, hdl_c = 50, statin = TRUE, dm = FALSE, smoking = TRUE, egfr = 60, bmi = 30, hba1c = 9, uacr = 900, quiet = TRUE ) expect_identical(res_from_partial, res_from_full) expect_identical(res_from_partial_change_age, res_from_full_change_age) expect_identical(res_from_partial_change_bp_tx, res_from_full_change_bp_tx) expect_identical(res_from_partial_change_sex, res_from_full_change_sex) expect_identical(res_from_partial_change_multiple, res_from_full_change_multiple) }) test_that("check_equations_partial() works", { res_from_partial <- check_equations_partial(quiet = TRUE) res_from_full <- check_equations( age = 50, sbp = 160, bp_tx = TRUE, total_c = 200, hdl_c = 45, statin = FALSE, dm = TRUE, smoking = FALSE, egfr = 90, bmi = 35, quiet = TRUE ) res_from_partial_change_age <- check_equations_partial(age = 67, quiet = TRUE) res_from_full_change_age <- check_equations( age = 67, sbp = 160, bp_tx = TRUE, total_c = 200, hdl_c = 45, statin = FALSE, dm = TRUE, smoking = FALSE, egfr = 90, bmi = 35, quiet = TRUE ) res_from_partial_change_bp_tx <- check_equations_partial(bp_tx = FALSE, quiet = TRUE) res_from_full_change_bp_tx <- check_equations( age = 50, sbp = 160, bp_tx = FALSE, total_c = 200, hdl_c = 45, statin = FALSE, dm = TRUE, smoking = FALSE, egfr = 90, bmi = 35, quiet = TRUE ) res_from_partial_change_multiple <- check_equations_partial( sbp = 155, total_c = 188, hdl_c = 50, statin = TRUE, dm = FALSE, smoking = TRUE, egfr = 60, bmi = 30, hba1c = 9, uacr = 900, quiet = TRUE ) res_from_full_change_multiple <- check_equations( age = 50, sbp = 155, bp_tx = TRUE, total_c = 188, hdl_c = 50, statin = TRUE, dm = FALSE, smoking = TRUE, egfr = 60, bmi = 30, hba1c = 9, uacr = 900, quiet = TRUE ) expect_identical(res_from_partial, res_from_full) expect_identical(res_from_partial_change_age, res_from_full_change_age) expect_identical(res_from_partial_change_bp_tx, res_from_full_change_bp_tx) expect_identical(res_from_partial_change_multiple, res_from_full_change_multiple) }) test_that("Output of check_equations() is as expected", { expect_snapshot( check_equations( age = 50, sbp = 155, bp_tx = TRUE, total_c = 188, hdl_c = 50, statin = TRUE, dm = FALSE, smoking = TRUE, egfr = 60, bmi = 30, hba1c = 9, uacr = 900, quiet = TRUE ) ) expect_snapshot( check_equations( age = 50, sbp = 155, bp_tx = TRUE, total_c = 800, hdl_c = 50, statin = TRUE, dm = FALSE, smoking = TRUE, egfr = 60, bmi = 30, hba1c = 9, uacr = 900, quiet = FALSE ) ) }) test_that("Output of nested_lapply() is as expected", { expect_snapshot(nested_lapply("sbp")) expect_snapshot(nested_lapply("total_c", chol_unit = "mg")) }) test_that("test_diff_col_name() works as expected", { expect_identical( quote( { dat <- make_dat(5) %>% dplyr::mutate(age = dplyr::case_when(age > 59 ~ 59, .default = age)) names(dat)[which(names(dat) == "age")] <- "edad" expect_identical( do_lapply_for_use_dat_add_to_dat( dat, add_to_dat = TRUE, age = quote(edad), quiet = TRUE ), est_risk( use_dat = dat, age = edad, add_to_dat = TRUE, quiet = TRUE, progress = FALSE ) ) } ), test_diff_col_name(quote(age), quote(edad), "valid_sub", eval = FALSE) ) expect_identical( quote( { dat <- make_dat(5, add_time_and_model = FALSE) %>% dplyr::mutate(age = dplyr::case_when(age > 59 ~ 59, .default = age)) expected_msg <- paste0( "`", "age", "` ", "entered as the invalid column name ", "`", "edad", "`" ) expect_message( res <- est_risk( use_dat = dat, age = edad, add_to_dat = TRUE, quiet = FALSE, progress = FALSE, optional_strict = TRUE ), expected_msg ) expect_equal(count_nas_from_res(res), 50) } ), test_diff_col_name(quote(age), quote(edad), "invalid_sub", eval = FALSE) ) })