test_that("CKD-EPI function works", { expect_equal( calc_egfr(1.5, age = 55, sex = "female", quiet = TRUE), 41 ) expect_equal( calc_egfr(1.5, age = 55, sex = "female", quiet = TRUE), calc_egfr(1.5, units = "mg", age = 55, sex = "female", quiet = TRUE) ) expect_equal( calc_egfr(1.5, units = "mg/dL", age = 55, sex = "female", quiet = TRUE), calc_egfr(1.5, units = "mg", age = 55, sex = "female", quiet = TRUE) ) expect_equal( calc_egfr(1.5, age = 55, sex = "male", quiet = TRUE), 55 ) expect_equal( calc_egfr(1.5, age = 43, sex = "m", quiet = TRUE), 59 ) expect_equal( calc_egfr(1.5, age = 43, sex = "f", quiet = TRUE), 44 ) expect_equal( calc_egfr(102, units = "umol", age = 43, sex = "f", quiet = TRUE), 60 ) expect_equal( calc_egfr(111, units = "umol", age = 77, sex = "m", quiet = TRUE), 59 ) expect_equal( calc_egfr(111, units = "umol", age = 77, sex = "m", quiet = TRUE), calc_egfr(111, units = "umol/L", age = 77, sex = "m", quiet = TRUE) ) expect_warning( calc_egfr(1.5, age = 43, sex = "f"), "intended for internal package use" ) expect_no_warning( estimate_risk( age = 43, sex = "f", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = calc_egfr(1.5), bmi = 22 ) ) expect_equal( estimate_risk( age = 43, sex = "f", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = calc_egfr(1.5), bmi = 22 ), estimate_risk( age = 43, sex = "f", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = 44, bmi = 22 ) ) expect_equal( estimate_risk( age = 43, sex = "f", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = calc_egfr(155, "umol"), bmi = 22 ), estimate_risk( age = 43, sex = "f", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = 37, bmi = 22 ) ) }) test_that("BMI calculation works", { # Metric expect_equal( calc_bmi(70, 175, "metric", quiet = TRUE), 22.9 ) expect_equal( calc_bmi(111, 188, "metric", quiet = TRUE), 31.4 ) # Nonmetric expect_equal( calc_bmi(154, 70, quiet = TRUE), 22.1 ) expect_equal( calc_bmi(242, 67, quiet = TRUE), 37.9 ) expect_warning( calc_bmi(242, 67), "intended for internal package use" ) expect_no_warning( estimate_risk( age = 50, sex = "m", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = 88, bmi = calc_bmi(154, 70) ) ) expect_equal( estimate_risk( age = 50, sex = "m", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = 88, bmi = calc_bmi(154, 70) ), estimate_risk( age = 50, sex = "m", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = 88, bmi = 22.1 ) ) expect_equal( estimate_risk( age = 50, sex = "m", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = 88, bmi = calc_bmi(111, 180, "metric") ), estimate_risk( age = 50, sex = "m", sbp = 120, bp_tx = FALSE, total_c = 200, hdl_c = 50, statin = FALSE, dm = FALSE, smoking = FALSE, egfr = 88, bmi = 34.3 ) ) })