* using log directory ‘/srv/hornik/tmp/CRAN/pql.Rcheck’ * using R Under development (unstable) (2024-04-10 r86396) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘pql/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘pql’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘The package maintainer ’ New submission Possibly misspelled words in DESCRIPTION: Guo (8:529) The Title field should be in title case. Current version is: ‘A partitioned quasi-likelihood for distributed statistical inference’ In title case that is: ‘A Partitioned Quasi-Likelihood for Distributed Statistical Inference’ DESCRIPTION fields with placeholder content: Maintainer: The package maintainer * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘pql’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘LICENSE.md’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE pqlBLogist : l: no visible binding for global variable ‘yr’ pqlBLogist: no visible global function definition for ‘grad’ pqlBLogist: no visible global function definition for ‘hessian’ pqlBpoisson1 : l: no visible binding for global variable ‘yr’ pqlBpoisson1: no visible global function definition for ‘grad’ pqlBpoisson1: no visible global function definition for ‘hessian’ Undefined global functions or variables: grad hessian yr * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘G’ ‘X’ ‘beta’ ‘data’ ‘n’ ‘nk’ ‘p’ ‘pqlLogist’ ‘y’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Documented arguments not in \usage in Rd file 'pqlBLogist.Rd': ‘n’ ‘p’ Documented arguments not in \usage in Rd file 'pqlBpoisson1.Rd': ‘n’ ‘p’ Documented arguments not in \usage in Rd file 'pqlBpoisson2.Rd': ‘n’ ‘p’ Objects in \usage without \alias in Rd file 'pqlLogist.Rd': ‘pqlLogist’ Documented arguments not in \usage in Rd file 'pqlPoisson.Rd': ‘n’ ‘p’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... ERROR Warning: parse error in file 'lines': 1: unexpected symbol 24: prob=1/exp(-(0.48+X 25: ln ^ ** will not attempt to run examples * checking examples ... SKIPPED * checking for unstated dependencies in ‘tests’ ... WARNING 'library' or 'require' call not declared from: ‘testthat’ * checking tests ... [0s/0s] ERROR Running ‘testthat.R’ [0s/0s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > > library(testthat) Error in library(testthat) : there is no package called 'testthat' Execution halted * checking PDF version of manual ... [3s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 3 WARNINGs, 3 NOTEs