* using log directory 'd:/RCompile/CRANincoming/R-devel/pql.Rcheck' * using R version 4.4.0 alpha (2024-04-05 r86346 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'pql/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'pql' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'The package maintainer ' New submission Possibly misspelled words in DESCRIPTION: Guo (8:529) The Title field should be in title case. Current version is: 'A partitioned quasi-likelihood for distributed statistical inference' In title case that is: 'A Partitioned Quasi-Likelihood for Distributed Statistical Inference' DESCRIPTION fields with placeholder content: Maintainer: The package maintainer * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'pql' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: 'LICENSE.md' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE pqlBpoisson1 : l: no visible binding for global variable 'yr' pqlBpoisson1: no visible global function definition for 'grad' pqlBpoisson1: no visible global function definition for 'hessian' pqlBpoisson2: no visible binding for global variable 'y' pqlBpoisson2: no visible binding for global variable 'X' pqlBpoisson2: no visible binding for global variable 'p' Undefined global functions or variables: X grad hessian p y yr * checking Rd files ... NOTE prepare_Rd: pqlLogist.Rd:21-23: Dropping empty section \description * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: 'pqlLogist' All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking for code/documentation mismatches ... WARNING Functions or methods with usage in Rd file 'pqlBLogist.Rd' but not in code: 'pqlBLogist' Codoc mismatches from Rd file 'pqlLogist.Rd': pqlLogist Code: function(data, G, nk) Docs: function(data, G = G, nk = nk) Mismatches in argument default values: Name: 'G' Code: Docs: G Name: 'nk' Code: Docs: nk * checking Rd \usage sections ... WARNING Documented arguments not in \usage in Rd file 'pqlBpoisson1.Rd': 'n' 'p' Documented arguments not in \usage in Rd file 'pqlBpoisson2.Rd': 'n' 'p' Objects in \usage without \alias in Rd file 'pqlLogist.Rd': 'pqlLogist' Documented arguments not in \usage in Rd file 'pqlPoisson.Rd': 'n' 'p' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... NOTE Rd files without \description: 'pqlLogist.Rd' * checking for unstated dependencies in examples ... ERROR Warning: parse error in file 'lines': 1: unexpected symbol 25: prob=1/exp(-(0.48+X 26: ln ^ ** will not attempt to run examples * checking examples ... SKIPPED * checking for unstated dependencies in 'tests' ... WARNING 'library' or 'require' call not declared from: 'testthat' * checking tests ... ERROR Running 'testthat.R' Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > > library(testthat) Error in library(testthat) : there is no package called 'testthat' Execution halted * checking PDF version of manual ... [12s] OK * checking HTML version of manual ... OK * DONE Status: 2 ERRORs, 4 WARNINGs, 5 NOTEs