* installing *source* package ‘poppr’ ...
** using staged installation
** libs
using C compiler: ‘Debian clang version 17.0.6 (3)’
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c adjust_missing.c -o adjust_missing.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c bitwise_distance.c -o bitwise_distance.o
bitwise_distance.c:815:7: warning: variable 'chr_length' set but not used [-Wunused-but-set-variable]
  815 |   int chr_length;
      |       ^
bitwise_distance.c:1190:7: warning: variable 'chr_length' set but not used [-Wunused-but-set-variable]
 1190 |   int chr_length;
      |       ^
2 warnings generated.
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c mlg_clustering.c -o mlg_clustering.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c mlg_counter.c -o mlg_counter.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c msn.c -o msn.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c omp_test.c -o omp_test.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c permut_shuffler.c -o permut_shuffler.o
clang-17  -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -c poppr_distance.c -o poppr_distance.o
poppr_distance.c:428:6: warning: variable 'numel' set but not used [-Wunused-but-set-variable]
  428 |         int numel; // Number of elements in returned matrix
      |             ^
1 warning generated.
clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o poppr.so adjust_missing.o bitwise_distance.o init.o mlg_clustering.o mlg_counter.o msn.o omp_test.o permut_shuffler.o poppr_distance.o -fopenmp -L/home/hornik/tmp/R-d-clang-17/lib -lR
installing to /srv/hornik/tmp/CRAN/poppr.Rcheck/00LOCK-poppr/00new/poppr/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function from function ‘as.genambig’ in package ‘poppr’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (poppr)