downloading reverse dependencies ... downloading ecospat_4.1.1.tar.gz ... ok downloading FEprovideR_1.1.tar.gz ... ok downloading GGMnonreg_1.0.0.tar.gz ... ok downloading sgof_2.3.5.tar.gz ... ok downloading SSDM_0.2.9.tar.gz ... ok downloading forrel_1.6.1.tar.gz ... ok installing dependencies ‘adehabitatHR’, ‘bestglm’, ‘biomod2’, ‘DiscreteDatasets’, ‘ecodist’, ‘GGMncv’, ‘ibdsim2’, ‘pedFamilias’, ‘poibin’, ‘rms’, ‘sdm’, ‘spThin’ begin installing package ‘adehabitatHR’ begin installing package ‘biomod2’ begin installing package ‘poibin’ begin installing package ‘ecodist’ begin installing package ‘bestglm’ begin installing package ‘GGMncv’ begin installing package ‘DiscreteDatasets’ begin installing package ‘spThin’ begin installing package ‘sdm’ begin installing package ‘pedFamilias’ begin installing package ‘ibdsim2’ begin installing package ‘rms’ * installing *source* package ‘poibin’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0KqMVX/R.INSTALL387da78893a6c/poibin/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dftcf.c -o dftcf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c poibin_init.c -o poibin_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o poibin.so dftcf.o poibin_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0KqMVX/R.INSTALL387da78893a6c/poibin/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-poibin/00new/poibin/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (poibin) * installing *source* package ‘DiscreteDatasets’ ... ** package ‘DiscreteDatasets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DiscreteDatasets) * installing *source* package ‘spThin’ ... ** package ‘spThin’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spThin) * installing *source* package ‘ecodist’ ... ** package ‘ecodist’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptIixar/R.INSTALL387da3696403fc/ecodist/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ecodist.c -o ecodist.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ecodist.so ecodist.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptIixar/R.INSTALL387da3696403fc/ecodist/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-ecodist/00new/ecodist/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ecodist) * installing *source* package ‘pedFamilias’ ... ** package ‘pedFamilias’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pedFamilias) * installing *source* package ‘bestglm’ ... ** package ‘bestglm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bestglm) * installing *source* package ‘adehabitatHR’ ... ** package ‘adehabitatHR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9IFhn4/R.INSTALL387d9d19a08130/adehabitatHR/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tests.c -o tests.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o adehabitatHR.so init.o tests.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9IFhn4/R.INSTALL387d9d19a08130/adehabitatHR/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-adehabitatHR/00new/adehabitatHR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adehabitatHR) * installing *source* package ‘ibdsim2’ ... ** package ‘ibdsim2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpfigmcm/R.INSTALL387dae1988bde7/ibdsim2/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ibdsim2.cpp -o ibdsim2.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ibdsim2.so RcppExports.o ibdsim2.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpfigmcm/R.INSTALL387dae1988bde7/ibdsim2/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-ibdsim2/00new/ibdsim2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ibdsim2) * installing *source* package ‘GGMncv’ ... ** package ‘GGMncv’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-14 -std=gnu++17 accepts -g... yes checking how to run the C++ preprocessor... g++-14 -std=gnu++17 -E checking for macOS... not found as on Linux checking for OpenMP... found configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsSkMxV/R.INSTALL387da44f486de8/GGMncv/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c ggmncv_fast.cpp -o ggmncv_fast.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o GGMncv.so RcppExports.o ggmncv_fast.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsSkMxV/R.INSTALL387da44f486de8/GGMncv/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-GGMncv/00new/GGMncv/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GGMncv) * installing *source* package ‘rms’ ... ** package ‘rms’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSeCIDe/R.INSTALL387daf61d7c2db/rms/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c lrmfit.f -o lrmfit.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c mlmats.f -o mlmats.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c ormuv.f -o ormuv.o ormuv.f:104:5: 104 | 23033 continue | 1 Warning: Label 23033 at (1) defined but not used [-Wunused-label] ormuv.f:114:5: 114 | 23029 continue | 1 Warning: Label 23029 at (1) defined but not used [-Wunused-label] ormuv.f:68:5: 68 | 23027 continue | 1 Warning: Label 23027 at (1) defined but not used [-Wunused-label] ormuv.f:60:5: 60 | 23025 continue | 1 Warning: Label 23025 at (1) defined but not used [-Wunused-label] ormuv.f:116:5: 116 | 23015 continue | 1 Warning: Label 23015 at (1) defined but not used [-Wunused-label] ormuv.f:32:5: 32 | 23013 continue | 1 Warning: Label 23013 at (1) defined but not used [-Wunused-label] ormuv.f:35:5: 35 | 23011 continue | 1 Warning: Label 23011 at (1) defined but not used [-Wunused-label] ormuv.f:22:5: 22 | 23003 continue | 1 Warning: Label 23003 at (1) defined but not used [-Wunused-label] ormuv.f:25:5: 25 | 23001 continue | 1 Warning: Label 23001 at (1) defined but not used [-Wunused-label] gfortran-14 -fpic -g -O2 -Wall -mtune=native -c robcovf.f -o robcovf.o robcovf.f:40:5: 40 | 23021 continue | 1 Warning: Label 23021 at (1) defined but not used [-Wunused-label] robcovf.f:42:5: 42 | 23019 continue | 1 Warning: Label 23019 at (1) defined but not used [-Wunused-label] robcovf.f:33:5: 33 | 23017 continue | 1 Warning: Label 23017 at (1) defined but not used [-Wunused-label] robcovf.f:35:5: 35 | 23015 continue | 1 Warning: Label 23015 at (1) defined but not used [-Wunused-label] robcovf.f:26:5: 26 | 23013 continue | 1 Warning: Label 23013 at (1) defined but not used [-Wunused-label] robcovf.f:28:5: 28 | 23011 continue | 1 Warning: Label 23011 at (1) defined but not used [-Wunused-label] robcovf.f:19:5: 19 | 23009 continue | 1 Warning: Label 23009 at (1) defined but not used [-Wunused-label] robcovf.f:21:5: 21 | 23007 continue | 1 Warning: Label 23007 at (1) defined but not used [-Wunused-label] robcovf.f:44:5: 44 | 23005 continue | 1 Warning: Label 23005 at (1) defined but not used [-Wunused-label] robcovf.f:10:5: 10 | 23003 continue | 1 Warning: Label 23003 at (1) defined but not used [-Wunused-label] robcovf.f:12:5: 12 | 23001 continue | 1 Warning: Label 23001 at (1) defined but not used [-Wunused-label] gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o rms.so init.o lrmfit.o mlmats.o ormuv.o robcovf.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSeCIDe/R.INSTALL387daf61d7c2db/rms/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-rms/00new/rms/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rms) * installing *source* package ‘biomod2’ ... ** package ‘biomod2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Checking Models arguments... ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘mda’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘gam’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘earth’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘maxnet’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘randomForest’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘xgboost’ ** testing if installed package can be loaded from final location Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘mda’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘gam’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘earth’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘maxnet’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘randomForest’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘xgboost’ ** testing if installed package keeps a record of temporary installation path * DONE (biomod2) * installing *source* package ‘sdm’ ... ** package ‘sdm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sdm) checking poibin_1.6.tar.gz ... checking ecospat_4.1.1.tar.gz ... checking FEprovideR_1.1.tar.gz ... checking GGMnonreg_1.0.0.tar.gz ... checking sgof_2.3.5.tar.gz ... checking SSDM_0.2.9.tar.gz ... checking forrel_1.6.1.tar.gz ... Depends: Timings: user system elapsed poibin 15.479 2.669 18.607 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 5 Check results summary: poibin ... OK rdepends_ecospat ... OK rdepends_FEprovideR ... OK rdepends_forrel ... OK rdepends_GGMnonreg ... NOTE * checking Rd files ... [2s/2s] NOTE rdepends_sgof ... OK rdepends_SSDM ... OK