* using log directory ‘/srv/hornik/tmp/CRAN/pmxcode.Rcheck’ * using R Under development (unstable) (2024-02-17 r85935) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘pmxcode/DESCRIPTION’ ... OK * this is package ‘pmxcode’ version ‘0.1.2’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/4s] Note_to_CRAN_maintainers Maintainer: ‘Sebastien Bihorel ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘pmxcode’ can be installed ... [6s/6s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/10s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) get_code.Rd:28: Lost braces; missing escapes or markup? 28 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) get_derived_parms_code.Rd:19: Lost braces; missing escapes or markup? 19 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) get_init_code.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) get_mrg_parms_code.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) get_mrgsolve_code.Rd:27: Lost braces; missing escapes or markup? 27 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) get_ncmts.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) get_nonmem_code.Rd:28: Lost braces; missing escapes or markup? 28 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) get_parms_code.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) get_preamble_code.Rd:11: Lost braces; missing escapes or markup? 11 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) get_scaling_code.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) new_model_server.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input, output, session}{Internal parameters for {shiny}.} | ^ checkRd: (-1) replace_abbreviated.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_data.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_des.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_error.Rd:20: Lost braces; missing escapes or markup? 20 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_input.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_model.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_capture.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_cmt.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_global.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_main_pred.Rd:22: Lost braces; missing escapes or markup? 22 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_ode.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_omega.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_param.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_plugin.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_sigma.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_mrg_table.Rd:20: Lost braces; missing escapes or markup? 20 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_nmext.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_path.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}.} | ^ checkRd: (-1) replace_pk_pred.Rd:24: Lost braces; missing escapes or markup? 24 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_prior.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_problem.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_purpose.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}.} | ^ checkRd: (-1) replace_sigma.Rd:12: Lost braces; missing escapes or markup? 12 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_subroutine.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_table.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_tags.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ checkRd: (-1) replace_task.Rd:10: Lost braces; missing escapes or markup? 10 | \item{input}{Internal parameter for {shiny}} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s/1s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE