R Under development (unstable) (2025-10-21 r88963 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> library(testthat)
> library(pmartR)
> 
> test_check("pmartR")
[ FAIL 0 | WARN 11 | SKIP 12 | PASS 2382 ]

══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test_as_trelliData.R:4:3', 'test_as_trelliData.R:361:3',
  'test_as_trelliData_edata.R:4:3', 'test_as_trelliData_summary.R:4:3',
  'test_diffexp_seq.R:4:3', 'test_imd_anova.R:5:3', 'test_imd_anova.R:736:3',
  'test_imd_anova_paired.R:5:3', 'test_plots.R:14:3', 'test_trelliPlots.R:4:3',
  'test_trelliPlots_seqData.R:4:3', 'test_trelli_pvalue_filter.R:4:3'

[ FAIL 0 | WARN 11 | SKIP 12 | PASS 2382 ]
Deleting unused snapshots:
• plots/plot-corres.svg
• plots/plot-cvfilt-log-scale.svg
• plots/plot-cvfilt.svg
• plots/plot-datares-bw-theme.svg
• plots/plot-datares-palette.svg
• plots/plot-datares.svg
• plots/plot-dimres.svg
• plots/plot-imdanovafilt.svg
• plots/plot-isobaricnormres-bw-theme.svg
• plots/plot-isobaricnormres-global-normalized.svg
• plots/plot-isobaricnormres-palette.svg
• plots/plot-isobaricnormres.svg
• plots/plot-isobaricpepdata.svg
• plots/plot-lipiddata.svg
• plots/plot-metabdata.svg
• plots/plot-moleculefilt-cumulative.svg
• plots/plot-moleculefilt.svg
• plots/plot-nares-bar-group-color.svg
• plots/plot-nares-bar-group-order.svg
• plots/plot-nares-scatter.svg
• plots/plot-nmrdata.svg
• plots/plot-nmrnormres-2.svg
• plots/plot-nmrnormres-color-by.svg
• plots/plot-nmrnormres.svg
• plots/plot-normres.svg
• plots/plot-pepdata.svg
• plots/plot-prodata.svg
• plots/plot-proteomicsfilt-redundancy.svg
• plots/plot-proteomicsfilt.svg
• plots/plot-rmdfilt-color-g.svg
• plots/plot-rmdfilt-color-gp.svg
• plots/plot-rmdfilt-color-gs.svg
• plots/plot-rmdfilt-color-gsp.svg
• plots/plot-rmdfilt-color-hist-g.svg
• plots/plot-rmdfilt-color-hist-gp.svg
• plots/plot-rmdfilt-color-hist-gs.svg
• plots/plot-rmdfilt-color-hist-gsp.svg
• plots/plot-rmdfilt-color-hist-legend-g.svg
• plots/plot-rmdfilt-color-hist-legend-gp.svg
• plots/plot-rmdfilt-color-hist-legend-gs.svg
• plots/plot-rmdfilt-color-hist-legend-gsp.svg
• plots/plot-rmdfilt-color-hist-legend-p.svg
• plots/plot-rmdfilt-color-hist-p.svg
• plots/plot-rmdfilt-color-legend-g.svg
• plots/plot-rmdfilt-color-legend-gp.svg
• plots/plot-rmdfilt-color-legend-gs.svg
• plots/plot-rmdfilt-color-legend-gsp.svg
• plots/plot-rmdfilt-color-legend-p.svg
• plots/plot-rmdfilt-color-p.svg
• plots/plot-rmdfilt-g.svg
• plots/plot-rmdfilt-gp.svg
• plots/plot-rmdfilt-gs.svg
• plots/plot-rmdfilt-gsp.svg
• plots/plot-rmdfilt-hist-g.svg
• plots/plot-rmdfilt-hist-gp.svg
• plots/plot-rmdfilt-hist-gs.svg
• plots/plot-rmdfilt-hist-gsp.svg
• plots/plot-rmdfilt-hist-legend-g.svg
• plots/plot-rmdfilt-hist-legend-gp.svg
• plots/plot-rmdfilt-hist-legend-gs.svg
• plots/plot-rmdfilt-hist-legend-gsp.svg
• plots/plot-rmdfilt-hist-legend-p.svg
• plots/plot-rmdfilt-hist-p.svg
• plots/plot-rmdfilt-legend-g.svg
• plots/plot-rmdfilt-legend-gp.svg
• plots/plot-rmdfilt-legend-gs.svg
• plots/plot-rmdfilt-legend-gsp.svg
• plots/plot-rmdfilt-legend-p.svg
• plots/plot-rmdfilt-p.svg
• plots/plot-rmdfilt-pval-g.svg
• plots/plot-rmdfilt-pval-gp.svg
• plots/plot-rmdfilt-pval-gs.svg
• plots/plot-rmdfilt-pval-gsp.svg
• plots/plot-rmdfilt-pval-legend-g.svg
• plots/plot-rmdfilt-pval-legend-gp.svg
• plots/plot-rmdfilt-pval-legend-gs.svg
• plots/plot-rmdfilt-pval-legend-gsp.svg
• plots/plot-rmdfilt-pval-legend-p.svg
• plots/plot-rmdfilt-pval-p.svg
• plots/plot-rmdfilt-sample-legend-g.svg
• plots/plot-rmdfilt-sample-legend-gp.svg
• plots/plot-rmdfilt-sample-legend-gs.svg
• plots/plot-rmdfilt-sample-legend-gsp.svg
• plots/plot-rmdfilt-sample-legend-p.svg
• plots/plot-rmdfilt-sampleg.svg
• plots/plot-rmdfilt-samplegp.svg
• plots/plot-rmdfilt-samplegs.svg
• plots/plot-rmdfilt-samplegsp.svg
• plots/plot-rmdfilt-samplep.svg
• plots/plot-rnafilt.svg
• plots/plot-seqdata.svg
• plots/plot-spansres-bw-theme.svg
• plots/plot-spansres-color-high-color-low.svg
• plots/plot-spansres-n-biomolecule-bar.svg
• plots/plot-spansres.svg
• plots/plot-statres-anova-volcano.svg
• plots/plot-statres-anova.svg
• plots/plot-statres-combined-volcano.svg
• plots/plot-statres-combined.svg
• plots/plot-statres-gtest.svg
• plots/plot-statres-histogram.svg
• plots/plot-totalcountfilt.svg
> 
> proc.time()
   user  system elapsed 
  41.07    2.25   43.36