* using log directory 'd:/RCompile/CRANincoming/R-devel/pmartR.Rcheck'
* using R Under development (unstable) (2023-12-02 r85657 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'pmartR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pmartR' version '2.4.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Lisa Bramer <lisa.bramer@pnnl.gov>'

New submission

Possibly misspelled words in DESCRIPTION:
  Matzke (16:721, 16:780)
  NMR (16:302)
  PCA (16:507)
  Panomics (3:8, 4:13)
  Polpitiya (16:832)
  al (16:618, 16:679, 16:731, 16:790, 16:845, 16:912)
  et (16:615, 16:676, 16:728, 16:787, 16:842, 16:909)
  lipidomic (16:201)
  metabolomic (16:216)
  omics (16:119)
  proteomic (16:145)
  spectrometry (16:101)
  summarization (16:479)

Suggests or Enhances not in mainstream repositories:
  pmartRdata
Availability using Additional_repositories specification:
  pmartRdata   yes   https://pmartR.github.io/drat
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'pmartRdata'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pmartR' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [42s] OK
  Running 'testthat.R' [42s]
* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... [29s] OK
* DONE
Status: 2 NOTEs