* using log directory 'd:/RCompile/CRANincoming/R-devel/plotor.Rcheck'
* using R Under development (unstable) (2025-12-07 r89119 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'plotor/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'plotor' version '0.8.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'plotor' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [31s] ERROR
  Running 'testthat.R' [31s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(plotor)
  > 
  > test_check("plotor")
  Saving _problems/test-plot_or-119.R
  Saving _problems/test-plot_or-133.R
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 62 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-plot_or.R:97:3'): `table_or()` and `plot_or()` handle issues gracefully ──
  <dplyr:::mutate_error/rlang_error/error/condition>
  Error in `dplyr::mutate(medicaldata::strep_tb, arm = forcats::fct(as.character(arm), levels = c("Control", "Streptomycin")), dose_strep_g = as.numeric(dose_strep_g), dose_PAS_g = as.numeric(dose_PAS_g), gender = forcats::fct_infreq(gender), baseline_condition = forcats::fct(as.character(baseline_condition), levels = c("1_Good", "2_Fair", "3_Poor")), baseline_temp = forcats::fct(dplyr::case_match(baseline_temp, "1_<=98.9F/37.2C" ~ "<= 37.2C", "2_99-99.9F/37.3-37.7C" ~ "37.3 - 37.7C", "2_99-99.9F/37.3-37.7C/37.3-37.7C" ~      "37.3 - 37.7C", "3_100-100.9F/37.8-38.2C" ~ "37.8 - 38.2C", "3_100-100.9F/37.8-38.2C/37.8-38.2C" ~ "37.8 - 38.2C", "4_>=101F/38.3C" ~ ">= 38.3C"), levels = c("<= 37.2C", "37.3 - 37.7C", "37.8 - 38.2C", ">= 38.3C")), baseline_esr = forcats::fct_na_value_to_level(forcats::fct(dplyr::case_match(baseline_esr, "2_11-20" ~ "11-20", "3_21-50" ~ "21-50", "4_51+" ~ "51+", "<NA>" ~ NA), levels = c("11-20", "21-50", "51+")), level = "NA"), baseline_cavitation = forcats::fct(baseline_cavitation, levels = c("no",      "yes")), radiologic_6m = forcats::fct(radiologic_6m, levels = c("1_Death", "2_Considerable_deterioration", "3_Moderate_deterioration", "4_No_change", "5_Moderate_improvement", "6_Considerable_improvement")))`: i In argument: `baseline_temp = forcats::fct(...)`.
  Caused by error in `dplyr::case_match()`:
  ! Can't convert from `..1 (left)` <character> to <factor<ae9a9>> due to loss of generality.
  * Locations: 1
  ── Failure ('test-plot_or.R:117:3'): `assumption_checks` parameter works as expected ──
  Expected `{ ... }` not to throw any errors.
  Actually got a <simpleError> with message:
    'diabetes' is not an exported object from 'namespace:medicaldata'
  ── Error ('test-plot_or.R:122:3'): `assumption_checks` parameter works as expected ──
  Error in `eval(code, test_env)`: object 'list_models' not found
  Backtrace:
      ▆
   1. └─purrr::walk(...) at test-plot_or.R:122:3
   2.   └─purrr::map(.x, .f, ..., .progress = .progress)
   3.     └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
   4.       └─purrr:::vctrs_vec_compat(.x, .purrr_user_env)
  ── Error ('test-plot_or.R:289:5'): `assumption_sample_size()` works as expected ──
  Error: 'diabetes' is not an exported object from 'namespace:medicaldata'
  Backtrace:
       ▆
    1. ├─testthat::expect_silent(...) at test-plot_or.R:288:3
    2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
    3. │   ├─testthat (local) .capture(...)
    4. │   │ ├─withr::with_output_sink(...)
    5. │   │ │ └─base::force(code)
    6. │   │ ├─base::withCallingHandlers(...)
    7. │   │ └─base::withVisible(code)
    8. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. └─plotor:::get_lr_diabetes() at test-plot_or.R:289:5
   10.   └─plotor:::get_df_diabetes() at ./helper_generate_data.R:513:3
   11.     └─janitor::clean_names(medicaldata::diabetes) at ./helper_generate_data.R:144:3
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 62 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [27s] OK
* checking PDF version of manual ... [12s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR