* using log directory ‘/srv/hornik/tmp/CRAN/plotmo.Rcheck’
* using R Under development (unstable) (2024-02-18 r85939)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘plotmo/DESCRIPTION’ ... OK
* this is package ‘plotmo’ version ‘3.6.3’
* checking CRAN incoming feasibility ... [4s/4s] Note_to_CRAN_maintainers
Maintainer: ‘Stephen Milborrow <milbo@sonic.net>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘plotmo’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
plotmo.pairs:
  function(object, x, nresponse, trace, all2, ...)
plotmo.pairs.from.term.labels:
  function(term.labels, pred.names, trace, ...)

plotmo.x:
  function(object, trace, ...)
plotmo.x.gbm.aux:
  function(x, x.order, var.levels)

plotmo.y:
  function(object, trace, naked, expected.len, nresponse, ...)
plotmo.y.gbm.aux:
  function(y, x.order)

plot:
  function(x, ...)
plot.degree1:
  function(object, degree1, all1, center, ylim, type, nresponse,
           pmethod, trace, trace2, pt.col, jitter, iresponse,
           smooth.col, grid.col, inverse.func, grid.func, grid.levels,
           extend, ngrid1, is.int.only, level, func, nrug, draw.plot,
           x, y, singles, resp.levs, ux.list, ndiscrete, pred.names,
           abbr.pred.names, nfigs, uy, xflip, jittered.y, n.apartdep,
           ...)

plot:
  function(x, ...)
plot.degree2:
  function(object, degree2, all2, center, ylim, type, nresponse,
           pmethod, clip, trace, trace2, pt.col, jitter, iresponse,
           inverse.func, grid.func, grid.levels, extend, type2, ngrid2,
           draw.plot, do.par, x, y, pairs, resp.levs, ux.list,
           ndiscrete, pred.names, abbr.pred.names, nfigs, nsingles,
           npairs, xflip, yflip, swapxy, def.cex.main, n.apartdep, ...)

plot:
  function(x, ...)
plot.with.axis.par:
  function(object, which, trace, type, ...)

formula:
  function(x, ...)
formula.as.char.with.check:
  function(form, form.name, trace)

sort:
  function(x, decreasing, ...)
sort.unique:
  function(x)

print:
  function(x, ...)
print.grid.values:
  function(xgrid, trace)

format:
  function(x, ...)
format.err.field:
  function(x, xname, trace)

Apparent methods for exported generics not registered:
  plotmo.convert.na.nresponse.default plotmo.convert.na.nresponse.rq
  plotmo.convert.na.nresponse.rqs plotmo.pairs.C5.0 plotmo.pairs.GBMFit
  plotmo.pairs.WrappedModel plotmo.pairs.default
  plotmo.pairs.from.term.labels plotmo.pairs.gbm plotmo.pairs.gpe
  plotmo.pairs.parties plotmo.pairs.party_plotmo plotmo.pairs.pre
  plotmo.pairs.randomForest plotmo.pairs.rpart plotmo.pairs.train
  plotmo.pint.Gam plotmo.pint.default plotmo.pint.earth plotmo.pint.gam
  plotmo.pint.glm plotmo.pint.lm plotmo.pint.quantregForest
  plotmo.pint.rq plotmo.pint.rqs plotmo.predict.GBMFit
  plotmo.predict.WrappedModel plotmo.predict.bagging
  plotmo.predict.biglm plotmo.predict.boosting plotmo.predict.bruto
  plotmo.predict.clm plotmo.predict.cosso plotmo.predict.cv.glmnet
  plotmo.predict.default plotmo.predict.defaultm plotmo.predict.gbm
  plotmo.predict.glmnet plotmo.predict.glmnet.formula
  plotmo.predict.lars plotmo.predict.lda plotmo.predict.list
  plotmo.predict.mvr plotmo.predict.nn plotmo.predict.party_plotmo
  plotmo.predict.qda plotmo.predict.quantregForest plotmo.predict.rpart
  plotmo.predict.rq plotmo.predict.rqs plotmo.predict.svm
  plotmo.prolog.C5.0 plotmo.prolog.GBMFit plotmo.prolog.WrappedModel
  plotmo.prolog.cv.glmnet plotmo.prolog.default plotmo.prolog.gbm
  plotmo.prolog.glmnet plotmo.prolog.model_fit plotmo.prolog.parties
  plotmo.prolog.party plotmo.prolog.pre plotmo.prolog.train
  plotmo.prolog.xgb.Booster plotmo.residtype.default
  plotmo.residtype.rpart plotmo.residtype.train plotmo.singles.C5.0
  plotmo.singles.GBMFit plotmo.singles.WrappedModel
  plotmo.singles.cv.glmnet plotmo.singles.default plotmo.singles.gbm
  plotmo.singles.glmnet plotmo.singles.parties
  plotmo.singles.party_plotmo plotmo.singles.pre
  plotmo.singles.randomForest plotmo.singles.rpart plotmo.singles.train
  plotmo.type.bruto plotmo.type.clm plotmo.type.cosso
  plotmo.type.default plotmo.type.fda plotmo.type.knn3 plotmo.type.lars
  plotmo.type.lda plotmo.type.nnet plotmo.type.qda plotmo.type.rpart
  plotmo.type.train plotmo.type.tree plotmo.type.varmod plotmo.x.GBMFit
  plotmo.x.default plotmo.x.gbm plotmo.x.gbm.aux plotmo.x.mars
  plotmo.x.varmod plotmo.y.GBMFit plotmo.y.gbm plotmo.y.gbm.aux
  plotmo.y.lognet plotmo.y.mrelnet plotmo.y.multnet plotmo.y.varmod
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [0s/0s] OK
  Running ‘test.plotmo.R’ [0s/0s]
  Comparing ‘test.plotmo.Rout’ to ‘test.plotmo.Rout.save’ ... OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE