* installing *source* package ‘plmmr’ ... ** this is package ‘plmmr’ version ‘4.2.3’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c big_crossprod.cpp -o big_crossprod.o In file included from utilities.h:8, from big_crossprod.cpp:1: plmmr_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’ 10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.") | ^ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c big_sd.cpp -o big_sd.o In file included from utilities.h:8, from big_sd.cpp:1: plmmr_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’ 10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.") | ^ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c big_standardize.cpp -o big_standardize.o In file included from utilities.h:8, from big_standardize.cpp:1: plmmr_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’ 10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.") | ^ gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c plmm_init.c -o plmm_init.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c standardize.cpp -o standardize.o In file included from utilities.h:8, from standardize.cpp:1: plmmr_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’ 10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.") | ^ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c utilities.cpp -o utilities.o utilities.cpp:38: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 38 | #pragma omp parallel for private(j) schedule(static) utilities.cpp:55: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 55 | #pragma omp parallel for private(j) schedule(static) utilities.cpp:74: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 74 | #pragma omp parallel for private(j) schedule(static) utilities.cpp:92: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 92 | #pragma omp parallel for private(j) schedule(static) utilities.cpp:108: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 108 | #pragma omp parallel for private(j) schedule(static) In file included from utilities.h:8, from utilities.cpp:1: plmmr_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’ 10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.") | ^ g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o plmmr.so big_crossprod.o big_sd.o big_standardize.o plmm_init.o standardize.o utilities.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR installing to /home/hornik/tmp/CRAN_special_gcc-san/plmmr.Rcheck/00LOCK-plmmr/00new/plmmr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plmmr)